Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq297 134 2e-26 seq782 109 8e-19 seq469 107 3e-18 seq62 98.7 1e-15 seq26 96.9 5e-15 seq1413 93.3 6e-14 >seq297 Length=752846 Score = 134 bits (148), Expect = 2e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || || ||||| || ||||| || ||||| || | ||| |||| ||| | Sbjct 217706 ATGCAGATCTTCATCAAGACCCTTACAGGGAAGACTATCACCCTTGAGGTTGAGAGCTCA 217765 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| || ||||| ||||| || || || ||||||||||| Sbjct 217766 -GACACCATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGCATCCCACCTGATCA 217824 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || | |||||| |||| ||||||| |||||| || Sbjct 217825 GCAGCGCCTGATATTTGCTGGGAAGCAGCTTGAGGATGGTCGCACATTAGCAGATTACAA 217884 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||| || ||| | || ||||| | || ||| ||||||| || Sbjct 217885 CATCCAAAAAGAGTCCACTCTTCACTTGGTCCTCCGATTAAGAGGTGGAAT 217935 Score = 109 bits (120), Expect = 8e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || ||||| || || || | ||| |||| ||| | Sbjct 217480 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACAATCACCCTTGAGGTTGAGAGCTCA 217539 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | ||| || ||||| || ||||| || || ||||||||||| Sbjct 217540 -GACACCATTGATAATGTGAAAGCTAAGATTCAGGACAAAGAGGGGAT-CCACCTGATCA 217597 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || || |||||| |||| || || | ||| ||||| Sbjct 217598 GCAGCGCCTGATCTTTGCTGGGAAGCAGTTGGAGGATGGTCGCACCTTGGCAGACTATAA 217657 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||||| || || || ||||| ||||| Sbjct 217658 CATCCAAAAGGAGTCGACCTTGCACCTGGTT 217688 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||||| || || || || | ||| | || | Sbjct 218159 ATGCAGATCTTTGTTAAGACTTTAACAGGGAAGACAATTACCTTGGAGGTGGAGAGTTCT 218218 Query 124599 GATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || ||| || ||||| || || || || ||||| |||||||| Sbjct 218219 GACACCATTGATAATGTGAAGACA-AAGATTCAGGACAAGGAGGGCATACCCCCTGATCA 218277 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || | |||||| |||| || | | ||| || || Sbjct 218278 GCAGCGCCTCATCTTTGCCGGGAAGCAGCTGGAGGATGGTCGCACTCTTGCAGACTACAA 218337 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||||| |||||||||||| | || | || | ||| | || |||||| Sbjct 218338 CATTCAGAAAGAATCAACTCTTCACCTTGTCCTGCGTCTCCGTGGTGGT 218386 >seq782 Length=366579 Score = 109 bits (120), Expect = 8e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || |||||||| || ||||||||||| | ||||| || |||||||| || Sbjct 137959 CAGGACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTG 138018 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| | ||||| || | ||||| || ||||||||||| ||||| |||||| ||||| Sbjct 138019 GAAGATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTT 138078 Query 124749 TTA 124751 ||| Sbjct 138079 TTA 138081 >seq469 Length=520437 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || ||||| || |||||||| || ||||| || ||||| || |||||||| || || || Sbjct 233257 CAGGATAAGGAGGGTATACCTCCAGATCAGCAGAGGCTAATATTTGCAGGGAAGCAGTTG 233316 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 |||||| ||||||| |||| || || || ||||| |||||||||||| | || ||||| Sbjct 233317 GAGGATGGTCGAACCTTAGCCGACTACAACATTCAGAAAGAATCAACTCTCCACCTGGTT 233376 Query 124749 TT 124750 || Sbjct 233377 TT 233378 >seq62 Length=1642893 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || || ||||| || ||||| |||||| | |||||||| || ||||| || Sbjct 1294624 CAGGACAAGGAGGGGATACCCCCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAGTTG 1294565 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| ||| ||||| |||||||||||||| |||||| | || | ||| Sbjct 1294564 GAAGATGGTCGAACCCTAGCTGATTACAATATTCAAAAAGAGTCAACTCTTCACCTCGTT 1294505 Query 124749 TT 124750 || Sbjct 1294504 TT 1294503 >seq26 Length=2273700 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/215 (70%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || ||| | ||||| || || ||||| || || || | || ||||| Sbjct 441369 TACAGATGCAGATCTTTGTTAAGACTCTGACTGGCAAGACCATCACCCTTGAAGTTGAAA 441428 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 ||||||||| |||| | || || || ||||| || || || || || || | Sbjct 441429 GCTCTGATACAATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCAG 441488 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | ||||| ||||||||||| || || ||||| | |||||| |||| ||| | | || | Sbjct 441489 ACCAACAGAGGCTTATTTTCGCCGGCAAACAGCTTGAGGATGGTCGCACACTGGCTGACT 441548 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 | || ||||| ||||| || || | ||| | ||| Sbjct 441549 ACAACATTCAGAAAGAGTCGACGCTCCATCTTGTT 441583 >seq1413 Length=175152 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/137 (77%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || || || |||||||| || ||||||||||| | ||||| || ||||| || || Sbjct 102727 CAGGACAAGGAGGGTATACC-CCAGATCAACAAAGATTGATTTT-GCTGGAAAGCAGTTG 102784 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| ||||||| | || ||||| || ||||||||||| ||||| ||||| ||||| Sbjct 102785 GAAGATGGTCGAACCT-AGCTGATTACAACATTCAAAAAGAGTCAACACTGCATCTGGTT 102843 Query 124749 TTACGTTTACGAGGTGG 124765 | | | ||| | ||||| Sbjct 102844 TAAGGCTTA-GGGGTGG 102859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755203337740800