Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq281 120 3e-22 seq167 111 2e-19 seq26 109 6e-19 seq630 107 2e-18 seq4 107 2e-18 seq1259 100 3e-16 seq328 100 3e-16 seq297 95.1 1e-14 seq16 84.2 3e-11 >seq281 Length=803475 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| ||||| ||||||||||| || |||||||| |||| || |||||||| || ||||| Sbjct 254918 CTCTTTTTGGATATTGTAATCGGCGAGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 254859 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || |||||||| | || | || |||||||||| || | || | | | ||| Sbjct 254858 GATAAGACGTTGCTGGTCCGGGGGTATGCCCTCCTTGTCC-TGGATCTTGGCCTTAACGT 254800 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| ||||| || || ||||| | Sbjct 254799 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 254740 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 254739 CGAAGATCTGCAT 254727 Score = 116 bits (128), Expect = 4e-21 Identities = 144/193 (75%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || ||||||||||| || |||||||| |||| || ||||| || || ||||| Sbjct 255145 CTCCTTCTGGATATTGTAATCGGCAAGAGTCCGGCCGTCCTCAAGCTGTTTTCCGGCGAA 255086 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 255085 GATTAGCCTCTGCTGGTCCG-GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 255028 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| ||||| || || ||||| | Sbjct 255027 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 254968 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 254967 CGAAGATCTGCAT 254955 Score = 102 bits (112), Expect = 9e-17 Identities = 144/196 (73%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||| || |||||||||| || ||||||| | |||| || || ||||| || ||||| Sbjct 256013 CTCCTTTGGA-TATTGTAATCCGCGAGAGTCCTC-CGTCCTCCAGTTGCTTCCCGGCGAA 255956 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | ||||||||| | ||| | | |||||| ||| ||| || || | ||| Sbjct 255955 GATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCTTCA-CGT 255897 Query 43112 CGCCACC-GTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | || ||||| |||| ||||| |||| ||||| || || ||||| || |||| Sbjct 255896 TGTCAATAGTGTCCGAGCTC---TCCACCTCGAGGGTGATCGTCTTACCCGTGAGAGTCT 255840 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||||||||| Sbjct 255839 TCACGAAGATTTGCAT 255824 >seq167 Length=1102902 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| || ||||| || || || || |||| || |||||||| || ||||| Sbjct 191613 CTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAA 191672 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | || ||| || ||| ||| || |||| ||| Sbjct 191673 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGA-CGT 191731 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||| || || || | |||||||| ||||| || || ||||| | Sbjct 191732 TGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGA 191791 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 191792 CGAAGATCTGCAT 191804 Score = 82.4 bits (90), Expect = 9e-11 Identities = 151/215 (70%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | || ||| ||||| || || ||||| || || || || |||| || Sbjct 191367 CACCAGATGGAGAGTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTC 191426 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| || ||||| || || ||||||||||| | ||| | | ||||| | | | Sbjct 191427 AAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTAT-CTT 191485 Query 43094 GATTTTTTG-TTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATG 43148 || | || | |||| ||| | | | |||||| |||| || || || | |||||| Sbjct 191486 GAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGCTC---TCGACCTCCAAGGTGATG 191541 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || ||||| || || || ||||| Sbjct 191542 GTCTTGCCGGTGAGGGTCTTGACGAATATCTGCAT 191576 >seq26 Length=2273700 Score = 109 bits (120), Expect = 6e-19 Identities = 153/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || ||||||||||| ||||| || ||||| || ||| | || || Sbjct 442764 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 442705 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| |||||||| || ||||| |||||||| || | || | || |||||| ||| | Sbjct 442704 AGCTG-TTACCAGCAAAGATGAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 442646 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 ||||| || | | | | ||||| |||| || || |||| |||||||| Sbjct 442645 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTC---TCTACCTCGAGGGTGATGGTC 442589 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || |||||||||||||| ||||| Sbjct 442588 TTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 442557 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| ||||| ||||| ||||||||||||| || || | || || Sbjct 490502 ACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAATCAGCCAATGTTCGGCCATCCTCA 490443 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 |||||||| ||||| || ||||| | ||||||||||| || | || |||||||||| Sbjct 490442 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG-AGGGATGCCCTCCTTGTCC 490387 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| || || || || ||| | || || |||||||||||||| || Sbjct 490939 TCTTTCTGGATGTTGTAGTCTGCTAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAAA 490880 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| | ||||||||| | || | | ||||||||| ||| || |||| | Sbjct 490879 ATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTA 490820 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | ||||| |||| ||||| || | |||||||| || || || || ||||| Sbjct 490819 TCGATGGTGTCCGAGCTC---TCCACTTCCAAAGTGATGGTCTTCCCAGTGAGGGTCTTC 490763 Query 43170 ACAAAGATTTGCAT 43183 ||||| || ||||| Sbjct 490762 ACAAAAATCTGCAT 490749 >seq630 Length=471042 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 35908 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 35967 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 35968 GATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 36026 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || | |||| || || || || ||||| || ||||| | Sbjct 36027 TGTCGATGGTGTCGGAGGACTCTGCCTCGAGGGTAATAGTCTTCCCCGTGAGGGTCTTCA 36086 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 36087 CGAAGATCTGCATGTT 36102 >seq4 Length=3455462 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 42997 TTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGA 43056 ||||||||||||| || |||||||| || | || || |||||||| || || || || | Sbjct 2201537 TTTGAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCA 2201596 Query 43057 GTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CC 43115 ||||||||||| | || | || |||||||||| ||| ||| |||| ||| | | Sbjct 2201597 AACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGA-CGTTGTCA 2201655 Query 43116 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 43175 | || || || ||||| || | |||||||| ||||| || || ||||| || ||| Sbjct 2201656 ATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAG 2201715 Query 43176 ATTTGCAT 43183 || ||||| Sbjct 2201716 ATCTGCAT 2201723 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | || ||||||||| || || ||||| ||||| || || | || || Sbjct 2201061 CACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTC 2201120 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||| ||||| || || | ||||||||||| | || | || ||||||||| | Sbjct 2201121 CAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC-T 2201179 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || |||| | | ||| | | | |||||| |||| || || || | ||||||| Sbjct 2201180 GAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTC---TCGACCTCAAGAGTGATGG 2201236 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || || ||||| |||||||| ||||| Sbjct 2201237 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 >seq1259 Length=190105 Score = 100 bits (110), Expect = 3e-16 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || || || || || || || || |||| || ||||| || || ||||| Sbjct 49435 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTT-CCGGCGAA 49377 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 49376 GATGAGGCGCTGCTGGTCCG-GGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGT 49319 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 49318 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCA 49259 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 49258 CGAAGATCTGCATCTT 49243 >seq328 Length=735707 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || || || || | || ||||||||||| || ||||| Sbjct 4870 CTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTCTAGCTGCTTTCCGGCGAA 4929 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | || ||||||||| ||| || |||| ||| Sbjct 4930 GATAAGGCGCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 4988 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| ||||| || ||||| || || ||||| | Sbjct 4989 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGA 5048 Query 43171 CAAAGATTTGCATTTT 43186 | ||||| ||||| || Sbjct 5049 C-AAGATCTGCATCTT 5063 >seq297 Length=752846 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| |||||| || || || ||||| ||||| |||||||| ||||| || || | Sbjct 218146 CGCATCACCAAGTG-AAGGTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 218088 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || || ||||| ||||| || || || ||||||||||| | || | | |||||| Sbjct 218087 TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG-ATTCCTTCCTTG 218029 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 43144 ||| ||| | |||| |||| | | | ||||| |||| ||||| || | || Sbjct 218028 TCC-TGAATCTTTGCCTTGACATTATCAATGGTGTCGGAGCTC---TCCACCTCCAAAGT 217973 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || || || || || ||||| |||||||| |||||| Sbjct 217972 GATCGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCATT 217933 >seq16 Length=2636605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60056 GAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 60115 ||||| |||| || || ||| ||||||||| |||| |||||||||||||||| ||| Sbjct 1388081 GAAAACATTTCGCCATTGCCGGGGATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATA 1388022 Query 60116 CTCACCACTATACTAC 60131 |||||||||||||||| Sbjct 1388021 CTCACCACTATACTAC 1388006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571626355603680