Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq782 96.9 5e-15 seq62 93.3 6e-14 >seq782 Length=366579 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/140 (76%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 |||||||| ||||| ||||| |||| ||| || || || ||||| || || ||||| Sbjct 138097 GTTCCACC-CTAAGCCTTAAAACCAGATGCAATGTTGACTCTTTTTGAATGTTGTAATCA 138039 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | |||| || ||| || || ||||||||||| |||||||||||||| ||||| || Sbjct 138038 GCCAAGGTTCGGCCATCTTCCAACTGTTTTCCAGCGAAAATCAATCTTTGTTGATCTGGG 137979 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || || || || || || Sbjct 137978 GGTATACCCTCCTTGTCCTG 137959 >seq62 Length=1642893 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106 ||||||||| ||||| || || || | || | ||| || ||||| ||||| ||||| Sbjct 1294484 CGTTCCACCCCTAAGCCTCAAAACGAGGTGAAGAGTTGACTCTTTTTGAATATTGTAATC 1294543 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | || |||| | ||| || || ||||| |||||||||||||| ||||||||||| || Sbjct 1294544 AGCTAGGGTTCGACCATCTTCCAACTGTTTCCCAGCAAAAATCAACCTTTGCTGATCTGG 1294603 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 || || || || || || || Sbjct 1294604 GGGTATCCCCTCCTTGTCCTG 1294624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743277727595520