Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq167 113 3e-20 seq281 109 4e-19 seq1259 100 2e-16 seq155 98.7 6e-16 seq26 98.7 6e-16 seq4 96.9 2e-15 seq328 93.3 3e-14 seq630 89.7 3e-13 seq297 89.7 3e-13 >seq167 Length=1102902 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||| || |||| || ||| |||| |||| ||||||||| ||||| Sbjct 191614 TCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAG 191673 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| ||| | || ||| || || ||||| ||| | | | Sbjct 191674 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTG 191733 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | ||| ||||| |||| |||||||| ||||||||||| || || || Sbjct 191734 TCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACG 191793 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 191794 AAGATCTGCATC 191805 >seq281 Length=803475 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || ||||| || || ||||| |||| Sbjct 254953 CCACCGCGGAGACGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCGGCG 254894 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || || || |||||||| ||| Sbjct 254893 AGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGGGGT 254834 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 254833 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGGACTCGACC 254774 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||||||||| || || || |||||||||||| Sbjct 254773 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 254726 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||| |||| || ||| |||| || | ||| || || ||||| Sbjct 255144 TCCTTCTGGATATTGTAATCGGCAAGAGTCCGGCCGTCCTCAAGCTGTTTTCCGGCGAAG 255085 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | || ||||||||| ||||| ||| | | | Sbjct 255084 ATTAGCCTCTGCTGGTCCGGGGG-ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 255026 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || ||||| || | |||||||| ||||||||||| || || || Sbjct 255025 TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 254966 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 254965 AAGATCTGCAT 254955 >seq1259 Length=190105 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||| ||||||| || ||| |||| || | ||| || || ||||| Sbjct 49434 TCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTT-CCGGCGAAG 49376 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| ||| | || ||| ||||| ||||| ||| | | | Sbjct 49375 ATGAGGCGCTGCTGGTCCGGGGG-ATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTG 49317 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | || ||||| || | |||||||| ||||| || ||||| ||||| Sbjct 49316 TCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCACG 49257 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 49256 AAGATCTGCATC 49245 >seq155 Length=1009872 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 940182 CCGCCGCGGAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCG 940241 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| ||||| |||||||| || ||| Sbjct 940242 AGGGTCCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGG 940301 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | |||| || || || Sbjct 940302 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAAGACTCCACC 940361 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || || || ||||| || ||||| ||||||||||| Sbjct 940362 TCAAGGGTGATTGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 940408 >seq26 Length=2273700 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| | ||| || | || || | ||| ||||| |||||| Sbjct 441564 TCTTTCTGAATGTTGTAGTCAGCCAGTGTGCGACCATCCTCAAGCTGTTTGCCGGCGAAA 441505 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||| ||||| || | || ||||||||| ||||| ||| | || Sbjct 441504 ATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTA 441445 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | ||| || || | |||||||| ||||| || ||||| || ||| Sbjct 441444 TCGATTGTATCAGAGCTTTCAACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTAACA 441385 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 441384 AAGATCTGCATC 441373 Score = 96.9 bits (106), Expect = 2e-15 Identities = 164/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || || || | ||| ||||||||| ||||||||||| | Sbjct 490975 CCACCACGAAGGCGCAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGCT 490916 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| | || || | |||||| || || |||||||||| ||||||||| | ||| Sbjct 490915 AGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCAGGAGGG 490856 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGT-CGA---TT 34337 | || |||||||| ||||| ||| | || |||||| || ||| | Sbjct 490855 ATCCCT-TCCTTGTCCTGGATCTTGGCCTTGACAT----TATCGATGGTGTCCGAGCTCT 490801 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || |||| |||||||| || || ||||| || |||||||| ||||||||| Sbjct 490800 CCACTTCCAAAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAAAATCTGCATC 490748 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| || | |||| ||| || || ||||||||||| | || | || | || Sbjct 490732 AGGACCAAATGAAGAGTAGATTCCTT-TGAATGTTGTAGTCCGCCAACGTGCGCCCATCC 490674 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||||||| || || || || ||||| |||||||| || || | || |||||| || Sbjct 490673 TCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCC 490614 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| || | | || | || | || || || | |||||||| Sbjct 490613 TGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTC 490554 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || ||||||||||||||||| Sbjct 490553 TTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 490522 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| || | |||| ||| || || ||||||||||| | |||| || | || Sbjct 442767 AGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCC 442708 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || |||||||||||||| || || | || |||||| || Sbjct 442707 TCCAGCTG-TTACCAGCAAAGATGAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCC 442649 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 || || ||||| || | | || | || | || || || | |||||||| Sbjct 442648 TGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTC 442589 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || |||||||||||||| Sbjct 442588 TTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 442557 >seq4 Length=3455462 Score = 96.9 bits (106), Expect = 2e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 34205 TGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGC 34264 || || |||||||||| ||| ||| | || || | ||||||||| || || || | Sbjct 2201539 TGAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAAA 2201598 Query 34265 CGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATC 34324 ||||||||||| ||| | || ||||||||| |||||| ||| | | | | || Sbjct 2201599 CGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCAATG 2201658 Query 34325 GAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATC 34384 | ||| | || || || || | |||||||| ||||| ||||| || || || |||||| Sbjct 2201659 GTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATC 2201718 Query 34385 TGCATC 34390 |||||| Sbjct 2201719 TGCATC 2201724 >seq328 Length=735707 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| || |||||||||| Sbjct 4835 CCGCCGCGGAGGCGGAGAACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGCG 4894 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||| || ||||| || || |||||||| || || Sbjct 4895 AGGGTGCGGCCATCCTCTAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGATCCGGTGGG 4954 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 4955 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 5014 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || ||||||||||| || || || |||||||||||| Sbjct 5015 TCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGAC-AAGATCTGCATC 5061 >seq630 Length=471042 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| |||||||| |||| || ||| |||| Sbjct 35888 AGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCC 35947 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||| ||||||||||| || | || ||||||||| Sbjct 35948 TCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 36007 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || || | || | || || || Sbjct 36008 TGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAGGACTCTGCCTCGAGGGTAATAGTC 36067 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || ||||| ||||||||||| Sbjct 36068 TTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 36099 >seq297 Length=752846 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | ||| || ||||| | ||| ||||||||| ||||||||||| | Sbjct 218385 CCACCACGGAGACGCAGGACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCTGCA 218326 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || || || ||||| |||||||| || ||| Sbjct 218325 AGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCAGGGGGT 218266 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | || | || | || | || || Sbjct 218265 ATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTATCAATGGTGTCAGAACTCTCCACC 218206 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || || || || || || | ||| || |||||||||||||| Sbjct 218205 TCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACAAAGATCTGCAT 218159 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34171 CAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACG 34230 ||||| || ||||| ||| || ||| ||| ||||| |||||||| || | |||| || Sbjct 218150 CAGCCGCATCACCAAGTG-AAGGTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCG 218092 Query 34231 GTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTC 34290 | || || | ||||| || || || || || ||||||||||| | | | | || Sbjct 218091 TCCATCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTC-TGGAGGATTCCTTC 218033 Query 34291 CTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGT 34350 |||||| |||||| ||| | || | || | |||| || || |||| || Sbjct 218032 CTTGTCCTGAATCTTTGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGT 217973 Query 34351 GATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || || || || ||||| || |||||||||||||| Sbjct 217972 GATCGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 217934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322966649855360