Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq297 113 4e-20 seq155 105 5e-18 seq26 105 5e-18 seq281 104 2e-17 seq167 95.1 1e-14 seq4 95.1 1e-14 >seq297 Length=752846 Score = 113 bits (124), Expect = 4e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || | | ||||||||||||||||| || ||| ||| | || || Sbjct 218140 ACCAAGTGAAGGTAGAT-TCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCATCCTCA 218082 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| ||||| || || || | ||||| ||||| ||||| | || ||||||||| | Sbjct 218081 AGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG-ATTCCTTCCTTGTCCTGA 218023 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| | ||||||||||| || |||||||| Sbjct 218022 ATCTTTGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGATCGTCTTC 217963 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||||||||| |||||||| ||||| Sbjct 217962 CCTGTCAGAGTCTTGACAAAGATCTGCAT 217934 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||||||||||||||| || |||| | || ||||| || || ||||| || Sbjct 218349 TCTTTCTGAATGTTGTAGTCTGCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAG 218290 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| || || || || | |||||||||||| ||| ||| ||| || Sbjct 218289 ATGAGGCGCTGCTGATCAGGGGGTATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTA 218230 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| || ||||||||||| |||||| ||||| || || | |||||| ||| Sbjct 218229 TCAATGGTGTCAGAACTCTCCACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACA 218170 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 218169 AAGATCTGCAT 218159 >seq155 Length=1009872 Score = 105 bits (116), Expect = 5e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||||||| || || | || || || || Sbjct 940205 GTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTCCGGCCATCCTCGAGCTG 940264 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| || | ||||| || || || || | |||||||||||| || || Sbjct 940265 CTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 940324 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | ||||||||| | ||| || ||||| ||||| Sbjct 940325 GGCCTTGACGTTCTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGT 940384 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 || |||||||| ||||| |||||| || Sbjct 940385 GAGGGTCTTCACGAAGATCTGCATGGTG 940412 >seq26 Length=2273700 Score = 105 bits (116), Expect = 5e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188 |||| || ||||| ||| ||||||||||||||||| |||| |||| | || || | Sbjct 441581 CAAGATGGAGCGTCGACTCTTTCTGAATGTTGTAGTCAGCCAGTGTGCGACCATCCTCAA 441522 Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248 | ||||| |||||||| || | || ||||||||| ||||| | ||||||||||| | Sbjct 441521 GCTGTTTGCCGGCGAAAATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGA 441462 Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308 | || ||| || | | | || | || || || | ||| || ||||||| Sbjct 441461 TCTTGGCCTTCACATTATCGATTGTATCAGAGCTTTCAACTTCAAGGGTGATGGTCTTGC 441402 Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | ||||||||||| |||||||| ||||| Sbjct 441401 CAGTCAGAGTCTTAACAAAGATCTGCAT 441374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||| |||||||||||||| |||| ||| | || ||| Sbjct 453216 ACCAAATGAAGAGTAGATTCCTT-TGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCC 453158 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||| || || || || | ||||| || || || || | |||||||| ||| Sbjct 453157 AGCTGTTA-CCAGCAAAGATGAGACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 453099 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | ||| |||| | ||| ||||| | ||| || ||||| Sbjct 453098 ATCTTAGCCTTTACATTGTCAACGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTT- 453040 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || ||||||||||||||||| |||||| Sbjct 453039 CCGGTAAGAGTCTTCACAAAGATCTGCATG 453010 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/210 (69%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||| |||||||||||||| ||| ||| | || ||| Sbjct 442764 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 442705 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | |||||| || || || || | |||||||| ||| Sbjct 442704 AGCTG-TTACCAGCAAAGATGAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 442646 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | ||| ||||| | ||| || ||||| Sbjct 442645 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTCTTT 442586 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| |||||||| |||||| Sbjct 442585 CCAGTGAGGGTCTTTACAAAGATCTGCATG 442556 >seq281 Length=803475 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 45180 CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239 |||| |||||||| || |||||||| |||| || ||| ||||| || || | ||||||| Sbjct 255980 CGTCCTCCAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCT 255921 Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAA 45299 | ||| || || ||| || | | ||||| | ||||||||| | ||| | Sbjct 255920 TATCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGAGCTCTCCACCTCGAGGGTGA 255861 Query 45300 TCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| ||||| ||||||||||| ||||||||||| Sbjct 255860 TCGTCTTACCCGTGAGAGTCTTCACGAAGATTTGCAT 255824 >seq167 Length=1102902 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| |||||||||||| || |||||| || | |||| || Sbjct 191141 ACCAGATGGAGGGTGGACTCCTTCTGAATATTATAGTCGGCAAGGGTCCTGCCGTCCTCA 191200 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| || ||| ||||| || || | |||||||| ||| Sbjct 191201 AGCTGCTTCCCGGC-AAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGG 191259 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| | ||||||||| | ||| |||||||| Sbjct 191260 ATCTTCGCCTTGACATTATCAATGGTATCCGAGCTCTCCACCTCAAGGGTGATCGTCTTT 191319 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || |||||||||||||| ||||| Sbjct 191320 CCCGTGAGGGTCTTCACAAAGATCTGCAT 191348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| || || ||||| || ||| || |||| |||| || ||||| ||||||||||| Sbjct 191385 CTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAA 191444 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| ||||| ||||| || || | ||| ||||| || ||| || ||| || Sbjct 191445 GATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTATCTTGAATCTTGGCCTTGACGTT 191504 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | ||||| | ||| ||||||| ||| || |||||||| || || ||||| || Sbjct 191505 GTCGATCGTGTCCGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 191564 Query 45325 AAAGATTTGCATG 45337 || || |||||| Sbjct 191565 GAATATCTGCATG 191577 >seq4 Length=3455462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||| ||||| ||||||||| ||| ||| | || || || || Sbjct 2201521 GTGAAGGGTGGATTCCTT-TGAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTG 2201579 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || ||||| ||||| ||||| || || | |||||||||||| || || Sbjct 2201580 CTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 2201639 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | | ||| ||||||||| | ||| || |||||||| || Sbjct 2201640 TGCCTTGACGTTGTCAATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGT 2201699 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 2201700 GAGGGTCTTGACGAAGATCTGCAT 2201723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394946370421876