Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq195 132 4e-26 seq859 127 2e-24 seq167 105 6e-18 seq26 98.7 9e-16 seq1259 96.9 3e-15 seq297 91.5 1e-13 seq2335 86.0 6e-12 seq630 86.0 6e-12 >seq195 Length=1014778 Score = 132 bits (146), Expect = 4e-26 Identities = 400/612 (65%), Gaps = 7/612 (1%) Strand=Plus/Plus Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||| ||||| || || | ||||| |||| | | || || || |||||||| || | | Sbjct 873316 CTTCTACGGCTTCCAGATAGCCATCGAAA-CATCCACTCCGAGATGTATTCTCTTTTGCT 873374 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 || | ||| | || ||| ||||| ||| | || ||| || |||| || | Sbjct 873375 GGAATCCTACATCAAAGACCCTGACGA-AAAGACCGCCTTTTCGT-GCTGTCGAGACGGT 873432 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 || ||| | || |||||||| ||||| | || ||||| | || ||| | | Sbjct 873433 CCCGGCGGTGGCGAAGAAGGCCCAGTGGGCGCTCCGGTGGATTGAGT---CCTCGGACTC 873489 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 ||||| ||| | || | || ||| | || || || || || ||||| || ||| ||| Sbjct 873490 CTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTT 873549 Query 58022 TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGA 58081 | || || ||| | ||||| |||||||| ||||| || ||||| || |||||| Sbjct 873550 CTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAACGA 873609 Query 58082 GTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACAT 58141 | | || || ||||||||||| ||||| || || || ||||| | ||||| | | | Sbjct 873610 GCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCCTCCT 873669 Query 58142 TGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGA 58201 | | || | | ||| |||||| | || ||| |||| || |||| ||||| Sbjct 873670 CAACCACAAGCTCCCTGAGGACCGCATCAAGTCAATCATCGCCGACGCTGTCGACATCGA 873729 Query 58202 AAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGAT 58261 | ||||| ||| ||| || | |||||||| || | || ||||| |||||||| Sbjct 873730 GAGGGAGTTCGTCTGCGACGCGTTGCCGGTGGCGCTGGTGGGGATGAATGGGGATTTGAT 873789 Query 58262 GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA 58321 | | ||||| ||||| || || || | || ||| | || || | || Sbjct 873790 GAGCGAATACATCGAGTTCGTGGCGGATCGGCTCTTGGGGGCGTTGGGTGCGGGAAGT-T 873848 Query 58322 TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAA 58381 ||| | |||||||| |||| ||| | |||| |||||| |||| ||||| || Sbjct 873849 GTACGGGGCAGCCAATCCGTTCGATTGGATGGAGTTGATATCGCTCCAGGGGAAGACGAA 873908 Query 58382 CTTTTTCGAAAA 58393 ||||||||| || Sbjct 873909 CTTTTTCGAGAA 873920 >seq859 Length=348630 Score = 127 bits (140), Expect = 2e-24 Identities = 338/508 (67%), Gaps = 9/508 (2%) Strand=Plus/Plus Query 57782 CTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCAT 57841 ||| ||||| || || | ||||| || ||| | || || || ||||| || || ||| | Sbjct 128104 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCCTCCT 128163 Query 57842 CGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAAT 57901 ||| | ||| | ||||| ||||| ||| | | || ||| ||| |||| || | Sbjct 128164 CGAATCCTACATCAAGGATCCGGACGA-AAAGATCGCCTTTTCG-CGCCGTCGAGACCGT 128221 Query 57902 GCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCAC 57961 || ||| | | |||||||| | ||| | || ||||| | | || | | Sbjct 128222 CCCGGCGGTGACAAAGAAGGCCCAATGGGCCCTCCGGTGGATCGAGTCCTCCGAGTCT-- 128279 Query 57962 GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT 58021 ||||||||| | || | || || |||||||| || || || ||||| || ||| ||| Sbjct 128280 -TTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTT 128338 Query 58022 -TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACG 58080 ||| | || || ||| | ||||| || || || ||||| || || || || ||||| Sbjct 128339 CTGCT-CTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAACG 128397 Query 58081 AGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACA 58140 || | || || ||||||||||| ||||| || || || ||||| | ||||| | | Sbjct 128398 AGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACTCCCTCC 128457 Query 58141 TTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCG 58200 | | || | || ||| |||||| | || ||| |||| || || | || | Sbjct 128458 TCAACCGCAAGCTCTCGGAGGACCGCATCAAGTCGATCATCGCCGACGCTGTGGACATTG 128517 Query 58201 AAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGA 58260 | | ||||| || ||| || || |||||||| || | || |||||| ||||||| Sbjct 128518 AGAGGGAGTTCGT-TGCGACGCGCTGCCGGTGGCGCTGGT-GGGATGAACGGGGATTTGA 128575 Query 58261 TGTCAAAGTACATTGAGTTTGTTGCCGA 58288 || ||||||||||||| || || || Sbjct 128576 TGAGCCAGTACATTGAGTTCGTGGCGGA 128603 >seq167 Length=1102902 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || || Sbjct 191577 CATGCAGATATTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTC 191518 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || || |||||||| | ||||| ||||| Sbjct 191517 GGACACGATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGTATTCCGCCGGACCA 191458 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| || || || | || ||| | || | ||||||||| Sbjct 191457 GCAGCGTCTGATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACCCTCGCCGATTATAA 191398 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||||||| || ||||| |||||||| || Sbjct 191397 CATCCAAAAAGAGTCTACTCTCCATCTGGTGCT 191365 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || ||||| || ||||| | || || || |||| Sbjct 191804 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTCGAGTCGTCG 191745 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||| || || ||| | || || |||||| Sbjct 191744 GACACGATCGACAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCGGACCAG 191685 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| ||||| ||| |||||||| || | |||||||||| Sbjct 191684 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTCGCCGATTATAAC 191625 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || || || || || || || || Sbjct 191624 ATTCAAAAGGAGTCCACCCTCCACCTTGTCCT 191593 >seq26 Length=2273700 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| ||||| || |||||| | || |||||| || Sbjct 441374 ATGCAGATCTTTGTTAAGACTCTGACTGGCAAGACCATCACCCTTGAAGTTGAAAGCTCT 441433 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | || |||||||| ||| | || || ||||| Sbjct 441434 GATACAATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAA 441493 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| ||||||||| | || || | || || || || ||| Sbjct 441494 CAGAGGCTTATTTTCGCCGGCAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAAC 441553 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| ||||| || ||||| || || |||| ||||| || Sbjct 441554 ATTCAGAAAGAGTCGACGCTCCATCTTGTTCTCCGACTCAGGGGTGG 441600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || |||||||| || || || || || |||||| |||| || || || Sbjct 442556 CATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTAGAGAGCTC 442615 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | ||| ||| ||||| ||| | || || || || Sbjct 442616 TGACACCATTGACAATGTAAAGGCTAAAATCCAGGATAAGGAGGGCATCCCACCAGATCA 442675 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| |||| || || || || || || Sbjct 442676 GCAGCGGCTCATCTTTGCTGGTAA-CAGCTGGAGGATGGGCGCACGCTGGCAGACTACAA 442734 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||||| ||||| ||||||||| |||| || Sbjct 442735 CATTCAAAAGGAATCTACTCTTCATTTGGTCCT 442767 >seq1259 Length=190105 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| ||||||||||| ||||| || |||||| |||| || || | Sbjct 49243 AAGATGCAGATCTTCGTGAAGACTCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCC 49302 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || |||||| || ||| | || || ||| Sbjct 49303 TCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAAGAGGGCAT-CCCCCGGAC 49361 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || |||||| | |||||| || | ||| ||| Sbjct 49362 CAGCAGCGCCTCATCTTCGCCGG-AAACAGCTCGAAGACGGCCGCACCCTCGCCGACTAT 49420 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || ||||| || || Sbjct 49421 AACATCCAGAAGGAGTCCACCCTCCATCTAGTCCT 49455 >seq297 Length=752846 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||||||||| || |||||||| | || || || ||| Sbjct 217934 ATGCAGATCTTTGTCAAGACTCTGACAGGGAAGACGATCACTTTGGAGGTGGAGAGCTCC 217993 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || || |||||||||||| | || || ||||| Sbjct 217994 GACACCATTGATAATGTCAAGGCAAAG-ATTCAGGACAAGGAAGGAAT-CCTCCAGACCA 218051 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 ||||||||| || || ||||| || || | || || | | | || || ||||| | Sbjct 218052 GCAGCGTCTTATCTTTGCTGGAAAGCAACTTGAGGA-TGGACGCACGCTGGCAGATTACA 218110 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGG 31415 ||||||| || ||||| || ||||| |||| | | ||||||| Sbjct 218111 ACATTCAGAAGGAATCTAC-CTTCACTTGGTGATGCGGCTGAGGG 218154 >seq2335 Length=105124 Score = 86.0 bits (94), Expect = 6e-12 Identities = 126/175 (72%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 22492 GTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGA 22551 ||| |||||||||||| | || || ||| | |||||||| || || || || ||| || Sbjct 18166 GTAGATGTTGGATGTGTATGGCTCAAAACACTCATTGTTGCCAAGAATGTGGCTGGTTGA 18225 Query 22552 AGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAAT-TTTAC 22610 ||| || ||||| || || | || || ||||| |||| || | ||| ||||| | | Sbjct 18226 AGCAGTGGGCATAGGAGCAACAAGAAGAGAGTTCCTCACTCCATTCTTGGAAATCATGTC 18285 Query 22611 TCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 |||| | ||| | ||| ||||| | || || || || ||||| ||||||||| Sbjct 18286 TCTT-AACATAGGCCAATCCCATTGGTCAGATGGAGTAACATT---CCACATATC 18336 >seq630 Length=471042 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || ||||| ||||| || || || || || || ||| |||| | || | Sbjct 36102 AACATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACTATTACCCTCGAGGCAGAGTCC 36043 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 36042 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCACCAGAC 35983 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || || ||| | || ||| || | |||||| Sbjct 35982 CAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGATTAC 35923 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || || || || Sbjct 35922 AACATCCAGAAGGAGTCCACTCTCCACCTCGTCCT 35888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445617313427520