Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq297 102 8e-17 seq4 100 3e-16 seq167 96.9 3e-15 seq281 91.5 1e-13 seq26 89.7 5e-13 seq1259 87.8 2e-12 seq155 87.8 2e-12 >seq297 Length=752846 Score = 102 bits (112), Expect = 8e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || |||| ||| || | || ||||||| || ||||||||||| ||||| ||||| ||| Sbjct 217932 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 217873 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || || ||||| || |||||| | ||||| || |||||||| || || Sbjct 217872 -AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGG 217814 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||| || || || ||| | |||| ||| | | || | ||||| | | ||| | Sbjct 217813 GATGCCCTCCTTATC-CTGAATCTTTGCTTTCACATTATCAATGGTGTCTGAGCTCTCAA 217755 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | ||||| || || | || || | ||| || ||||| Sbjct 217754 CCTCAAGGGTGATAGTCTTCCCTGTAAGGGTCTTGATGAAGATCTGCAT 217706 >seq4 Length=3455462 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | || | || ||||||| |||||||| ||||| ||||||||||| Sbjct 2201041 TGGCCACCACGGAGGCGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCC 2201100 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| || || || || || |||||| |||||| ||| ||||| || ||| Sbjct 2201101 GCCAGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGA 2201160 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || |||||||| ||||| ||| |||| | || | | || | ||||| | | ||| Sbjct 2201161 GGAATGCCTTCCTTGTC-CTGAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTCTC 2201219 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||| || | ||||| || || | || || || || || |||||| Sbjct 2201220 GACCTCAAGAGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCATA 2201271 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 139578 TTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCA 139637 ||||||| || || ||| || |||| || |||||||| || || ||| |||||| Sbjct 2201537 TTTGAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCA 2201596 Query 139638 GACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCA 139697 ||| ||||| || || || ||||| || ||||| ||| ||| || | | || | Sbjct 2201597 AACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCAA 2201656 Query 139698 CTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATA 139757 || || | || ||||||||||| ||| | |||||||| || | || || ||||| | Sbjct 2201657 TGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGA 2201716 Query 139758 TTTGCAT 139764 | ||||| Sbjct 2201717 TCTGCAT 2201723 >seq167 Length=1102902 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||| |||||||||||||||||| Sbjct 191577 GCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCGGC 191636 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||||| ||||| || || || |||||||||| ||||| || || || Sbjct 191637 GAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 191696 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| ||||| || ||| || || | | || | ||||| | | ||| || Sbjct 191697 GATGCCCTCTTTATCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGAC 191756 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||||||||| | || || ||||| || ||||| Sbjct 191757 CTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 191804 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||||||||| |||||||||||| | |||| ||| || || || || || Sbjct 191380 GTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTCAAGTTGCTTTCCG 191439 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||||||||| ||||| || || || || ||||| || || ||| | || | || Sbjct 191440 GCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTATC-TTGAATCTTGGCCTT 191498 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | ||| | ||||||||||| | || Sbjct 191499 GACGTTGTCGATCGTGTCCGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGT 191558 Query 139747 TTTTACGAATATTTGCAT 139764 || |||||||| ||||| Sbjct 191559 CTTGACGAATATCTGCAT 191576 >seq281 Length=803475 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||| | || ||||||||||| || || |||||| Sbjct 254954 GCCACCGCGGAGACGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCGGC 254895 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||| || ||||| || || || |||| ||||||||||| || || || Sbjct 254894 GAGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGGGG 254835 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||| || ||||| ||| || || | | || | ||||| | || ||| || Sbjct 254834 TATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATCGTGTCCGAGGACTCGAC 254775 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||| | || || ||||| || ||||| Sbjct 254774 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 254727 >seq26 Length=2273700 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| ||||| || ||||||||||| || || || |||| | || || Sbjct 442764 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 442705 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| ||||||||| |||| || || |||||||| || || ||||| || || || | Sbjct 442704 AGCTG-TTACCAGCAAAGATGAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 442646 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 ||||| |||| | || | ||||| | | ||| ||||| | ||| | ||||| Sbjct 442645 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTCTTT 442586 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || ||||| || || ||||| Sbjct 442585 CCAGTGAGGGTCTTTACAAAGATCTGCAT 442557 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| ||||| || ||| ||||||| || || || |||| | || || Sbjct 490729 ACCAAATGAAGAGTAGATTCCTTT-GAATGTTGTAGTCCGCCAACGTGCGCCCATCCTCC 490671 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||||||||||| |||| ||||| |||||||| || || ||||| || || || | Sbjct 490670 AACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGG 490611 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || |||| | || | ||||| | | ||| ||||||| ||| | ||||| Sbjct 490610 ATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTT 490551 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || | || || || || || ||||| Sbjct 490550 CCAGTGAGGGTCTTCACAAAGATCTGCAT 490522 >seq1259 Length=190105 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||| ||| | |||| ||||||||||||||| || Sbjct 49440 GTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTT-CCG 49382 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || ||||| || || || ||||| |||||||| ||| || || Sbjct 49381 GCGAAGATGAGGCGCTGCTGGTCCGG-GGGATGCCCTCTTTGTCCTGGATCTTGGCCTTG 49323 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | || ||| ||||| | ||| | |||||||| |||| || Sbjct 49322 ACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTC 49263 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 49262 TTCACGAAGATCTGCAT 49246 >seq155 Length=1009872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || |||||||| || ||| Sbjct 940181 GCCGCCGCGGAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 940240 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || |||||||| || || || |||| || || |||||||| || || Sbjct 940241 GAGGGTCCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGG 940300 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | |||||||| | |||||| Sbjct 940301 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAAGACTCCAC 940360 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| || || | || || ||||| || ||||| Sbjct 940361 CTCAAGGGTGATTGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCAT 940408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495898091395200