Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq297 87.8 2e-12 seq167 86.0 6e-12 >seq297 Length=752846 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGA 143028 |||| || || |||| |||||||| || || ||||||||||| || |||| || | Sbjct 218146 CGCATCACCAAGTGAAG-GTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 218088 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || ||||| || |||||| |||| ||||| ||||| || ||||| || ||||| || Sbjct 218087 -TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG-ATTCCTTCCTT 218030 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| ||| ||| || | | || | ||||| | | || || || | ||| | Sbjct 218029 GTCCTGAATCTTTGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGAT 217970 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || |||| || || || || || ||||| Sbjct 217969 CGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCAT 217934 >seq167 Length=1102902 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| |||||||| ||||| |||||| | |||| ||| || ||||| || || Sbjct 191380 GTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTCAAGTTGCTTTCCG 191439 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| ||||| || || || || ||||| || || ||| || || Sbjct 191440 GCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTATCTTGAATCTTGGCCTTG 191499 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| | || || || | || | ||||||||||| | || Sbjct 191500 ACGTTGTCGATCGTGTCCGAGCTCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTC 191559 Query 143168 TTTACGAATATTTGCAT 143184 || |||||||| ||||| Sbjct 191560 TTGACGAATATCTGCAT 191576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506844829033920