Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq859 176 7e-39 seq195 127 3e-24 >seq859 Length=348630 Score = 176 bits (194), Expect = 7e-39 Identities = 400/585 (68%), Gaps = 20/585 (3%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| | || | | | ||||| |||||||| ||||| |||||||| | Sbjct 127867 TGTTCCCCATCCGCTACCCTCCGGTGTGGGAGATGTACAAGAAGGCCGTCGCCTCCTTCT 127926 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGG---AGACTCGTTTGA 125112 |||| | ||| ||||||||||| |||| || || | | ||| | || | | Sbjct 127927 GGACCGCCGAGGAGGTCGATCTCTCCAGCGATCTCCCC-ACTGGCTCCACACCCTCACCA 127985 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || ||||| | ||||| || ||||| | |||||||| |||| |||||| || | Sbjct 127986 CCGAC---GAGCGCCACTTTATCTCCCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCA 128042 Query 125173 TCGTCAACGACAATCT-GTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTC 125230 ||||| ||| || || | | | || ||| | || || | || || |||| || Sbjct 128043 TCGTCCTCGAGAACCTCGCCGTC-CGCTTCATGTCCGACGTCCAG-ATCCCCGAGGC-TC 128099 Query 125231 GTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | || || ||||| ||||| ||| || |||||| | ||||| || |||||||| | Sbjct 128100 GCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTCC 128159 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACA 125349 | | || ||||| |||||| | || ||| | || ||| ||| |||| | Sbjct 128160 TCCTCGAATCCTACATCAAGGATCCGGA-CGAAAAGATCGCCT-TTTCGCGCCGTCGAGA 128217 Query 125350 CGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT 125409 | || ||| | | || ||||| ||||||| | ||||||||||| | | ||| Sbjct 128218 CCGTCCCGGCGGTGACAAAGAAGGCCCAATGGGCCCTCCGGTGGATCGAGTCCTCCGAGT 128277 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 ||| |||||| | || || ||||| |||||||| ||||| |||||||| || || | Sbjct 128278 CTTT---CGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCT 128334 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || ||| | ||||| |||||||||||||| || |||||||| || || || | Sbjct 128335 CCTTCTGCT-CTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCC 128393 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||| | || || || ||||||||||| ||||| ||||| ||| Sbjct 128394 AACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 128438 >seq195 Length=1014778 Score = 127 bits (140), Expect = 3e-24 Identities = 388/581 (67%), Gaps = 14/581 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| |||||| |||| | | | ||||| |||||||| ||||| |||||||| | Sbjct 873080 TGTTCCCCATCCGGTACCCCCAGGTGTGGGAGATGTACAAGAAGGCCGTCGCCTCCTTCT 873139 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTG 125115 |||| | ||| |||||||| || ||| ||||| | | | || | | | Sbjct 873140 GGACCGCCGAGGAGGTCGACCTCTCCGCCGACCTCCCCACTGGCTCCACACCCTCACCCC 873199 Query 125116 AAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCG 125175 || ||||| | || || || ||| | | || ||||| |||| |||||| || |||| Sbjct 873200 CGAC-GAGCGCCACTTCATCTCCCACGTCCTTGC-TTCTTCGCCGCCTCCGACGGCATCG 873257 Query 125176 TCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 || ||| || || || || ||| | || || | ||| | |||| ||| || Sbjct 873258 TCCTCGAGAACCTCGCCACCCGCTTCATGTCCGACGTCCAG-ATTGCCGAGGC-TCGCGC 873315 Query 125235 TTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 || ||||| ||||| || || || ||| | ||||| || ||||| ||| || | Sbjct 873316 CTTCTACGGCTTCCAGATAGCCATCGA-AACATCCACTCCGAGATGTATTCTCTTTTGCT 873374 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACGGT 125353 || ||||| || || | || ||| || || ||| || |||| ||||| Sbjct 873375 GGAATCCTACATCAAAGACCCTGA-CGAAAAGACCGCCT-TTTCGTGCTGTCGAGACGGT 873432 Query 125354 GCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTC 125413 ||| | | || ||||| || |||| | | |||||||| || | | | | || | Sbjct 873433 CCCGGCGGTGGCGAAGAAGGCCCAGTGGGCGCTCCGGTGGATTGA-GTCCTCG-GACTCC 873490 Query 125414 GTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTT 125472 | ||| || | || ||||| ||| | || || ||||| |||||||| || || | || Sbjct 873491 TT-CGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTT 873549 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 || ||||||| ||||||||||||||||| |||||||| || ||||| | |||| Sbjct 873550 CTGTT-CCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAACG 873608 Query 125533 AGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || | || || || ||||||||||| ||||| ||||| ||| Sbjct 873609 AGCTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCC 873649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740811352750560