Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq630 86.0 5e-12 seq155 86.0 5e-12 >seq630 Length=471042 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| || | || ||||||| |||||| Sbjct 35897 TGGAGAGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 35956 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| || || | | ||||||||| || || Sbjct 35957 TTTCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTG 36016 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||||| | | || ||||| |||| ||||| | ||||| || || || || || | Sbjct 36017 GACTTGACGTTGTCG--ATGGTGTCGGAGGACTCTGCCTCGAGGGTAATAGTCTTCCCCG 36074 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 |||| || ||||| || |||||||| Sbjct 36075 TGAGGGTCTTCACGAAGATCTGCAT 36099 >seq155 Length=1009872 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| ||||||||||| || || | || | ||||| |||||| Sbjct 940206 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTCCGGCCATCCTCGAGCTGC 940265 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||||| || | | ||||||||| || || Sbjct 940266 TTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTG 940325 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || |||| ||||||| ||| | || || || || || ||| Sbjct 940326 GCCTTGACGTTCTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTG 940385 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTG 48730 || || ||||| || |||||||| ||| Sbjct 940386 AGGGTCTTCACGAAGATCTGCATGGTG 940412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421113834722756