Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq812 116 2e-21 seq96 111 8e-20 seq446 107 1e-18 seq442 107 1e-18 seq186 107 1e-18 seq20747 105 3e-18 seq484 105 3e-18 seq330 105 3e-18 seq110 105 3e-18 seq54 105 3e-18 seq158 104 1e-17 seq125 102 4e-17 seq23 100 1e-16 seq10 100 1e-16 seq1495 95.1 6e-15 >seq812 Length=362239 Score = 116 bits (128), Expect = 2e-21 Identities = 86/100 (86%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 11431 ATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| | ||| || ||||||| || ||||||||| | | |||||||| ||||||||||| Sbjct 276347 ATAAAAAATAAAAAAAAAAT-AATCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 276289 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||| ||||||||||||||| ||||| Sbjct 276288 TTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 276249 >seq96 Length=1372193 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 852700 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 852759 Query 11513 AACTGAGCTAATGGGCCG 11530 |||||||||||| ||||| Sbjct 852760 AACTGAGCTAATAGGCCG 852777 >seq446 Length=608075 Score = 107 bits (118), Expect = 1e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 355134 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 355075 Query 11515 CTGAGCTAATGGGCCGTCGACGA 11537 |||||||||| |||| | | ||| Sbjct 355074 CTGAGCTAATAGGCCATTGGCGA 355052 >seq442 Length=600504 Score = 107 bits (118), Expect = 1e-18 Identities = 79/92 (86%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| |||||| || |||||||||| | | |||||||| |||||||||||||||||| Sbjct 362118 AATCAAAAATTTAAGTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 362059 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||||||||||| |||| Sbjct 362058 CACGACGCTCTAACCAACTGAGCTAATAGGCC 362027 >seq186 Length=1073521 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 641199 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 641258 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||| ||||| Sbjct 641259 CTGAGCTAATAGGCCG 641274 >seq20747 Length=2324 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 414 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 473 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 474 TGAGCTAATAGGCCG 488 >seq484 Length=631100 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 12867 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 12808 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 12807 CTGAGCTAATAGGCC 12793 >seq330 Length=774515 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 523193 TGGCCCATGCACGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 523134 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 523133 TGAGCTAATAGGCCG 523119 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 599811 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 599752 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||| ||||| Sbjct 599751 TGAGCTAATAGGCCG 599737 >seq110 Length=1261681 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 463162 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 463221 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 463222 CTGAGCTAATAGGCC 463236 >seq54 Length=1656952 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 778833 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 778892 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 778893 CTGAGCTAATAGGCC 778907 >seq158 Length=1173411 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 413552 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 413493 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 413492 TGAGCTAATAGGCC 413479 >seq125 Length=1261055 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 717386 AAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 717327 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 717326 GAACTGAGCTAATAGGCC 717309 >seq23 Length=2323044 Score = 100 bits (110), Expect = 1e-16 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGA-ACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || ||||||||| | || |||| |||| ||||||||||||||||||||||||||||| || Sbjct 263554 AAATGGCCCATGCA-GGTTCGAGACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 263612 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 263613 CAACTGAGCTAATAGGCC 263630 >seq10 Length=3029378 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 92018 TGGCCGATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 91959 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 91958 TGAGCTAATAGGCC 91945 >seq1495 Length=166771 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||| ||||||| | || ||||| ||||| ||||||||||||||||||||||| |||||| Sbjct 113104 TGGGCCATGAAGGTCTCCAACCTGCGACCGTCGCGTTATTAGCACGACGCTCTAACCAAC 113163 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 113164 TGAGCTAATAGGCC 113177 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261405930661456