Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1445 161 2e-35 seq52 158 2e-34 seq1292 152 8e-33 seq5461 145 1e-30 seq7 140 5e-29 seq107 136 6e-28 seq572 134 2e-27 seq40 122 1e-23 seq5 113 7e-21 >seq1445 Length=263603 Score = 161 bits (178), Expect = 2e-35 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| |||||||| || |||||||| || || Sbjct 203098 CTCCGCGACAACATCCAGGGGATCACGAAGCCGGCTATCCGCCGCCTGGCTCGCCGCGGC 203157 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || || | |||| || |||| |||| ||| | ||||||||| Sbjct 203158 GGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGTGGTGTCCTCAAGATCTTC 203217 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| |||||||||||| || ||||||||| Sbjct 203218 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCTCGCCGCAAGACTGTC 203277 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| ||||||| || | || || || ||||||| | ||||| ||||| Sbjct 203278 ACCGCCATGGATGTCGTCTACGCCCTCAAGCGCCAGGGCCGTACCCTCTATGGCTTTGG 203336 >seq52 Length=1645480 Score = 158 bits (174), Expect = 2e-34 Identities = 191/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || |||||||| || ||||||||||| || ||| Sbjct 956932 GCGAAGCGCCACCGCAAGGTTCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGATC 956991 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || |||||||| ||||| || ||||| || || | |||| || |||| | Sbjct 956992 CGCCGCCTTGCTCGTCGAGGTGGCGTGAAGCGGATCAGCGGCCTCATCTACGAGGAGACT 957051 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| |||| || ||| || |||||||||| Sbjct 957052 CGGGGGGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCTGTCACCTATACCGAG 957111 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||||| |||||||| |||| || || | || || || ||| Sbjct 957112 CACGCTCGCCGGAAGACCGTCACAGCCATGGATGTCGTGTACGCCCTCAAGCGCCAGGGC 957171 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | |||||||| || Sbjct 957172 CGCACTCTCTATGGTTTCGG 957191 >seq1292 Length=184476 Score = 152 bits (168), Expect = 8e-33 Identities = 192/261 (74%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || || || ||||||||||| || ||||| ||||| || || Sbjct 2055 GCCAAGCGGCATCGCAAGGTC-CTCCGGGATAACATCCAGGGTATCACGAAGCCTGCCAT 2113 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || |||||||| || || | |||| || |||| Sbjct 2114 CCGCCGCCTGGCCCGCCGAGGCGGCGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 2173 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | |||||||||||| ||| ||| |||| ||||| || ||||||||| Sbjct 2174 TCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGATGCCGTCACCTATACCGA 2233 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 2234 GCACGCTCGCCGGAAGACGGTCACCGCCATGGACGTTGTCTACGCCCTTAAGCGCCAGGG 2293 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 2294 CCGCACCCTCTACGGCTTTGG 2314 >seq5461 Length=64915 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || || |||||||| || ||||| ||||| || ||| Sbjct 56679 GCGAAGCGGCATCGGAAGGTGCTCCGCGACAACATCCAGGGCATCACAAAGCCGGCGATC 56620 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| || || || || ||||| || || | |||| || |||| | Sbjct 56619 CGCCGCCTGGCTCGCCGCGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGACT 56560 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||||||| ||| ||| |||| || || || ||| |||||| Sbjct 56559 CGGGGTGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAG 56500 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| ||||||| || | || || || ||| Sbjct 56499 CACGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGGCAGGGC 56440 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| | ||||| ||||| Sbjct 56439 CGTACCCTCTATGGCTTTGG 56420 >seq7 Length=3175819 Score = 140 bits (154), Expect = 5e-29 Identities = 180/246 (73%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | || || || || |||||||| || ||||||||||| || | Sbjct 2943032 CGCGAAGCGTCACCGCAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCGA 2942974 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| |||||||| | ||||| || || ||||| || || | |||| ||||||| Sbjct 2942973 TCCGGCGTCTGGCGAGGCGTGGCGGCGTGAAGCGCATCAGCGGTCTCATCTACGAAGAGA 2942914 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | || | ||||||||||| ||| ||| |||| ||||| || ||| || | Sbjct 2942913 CGAGAGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGATGCCGTCACCTACACGG 2942854 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| ||||| ||||||| |||| ||||| | || ||||| | Sbjct 2942853 AGCACGCCCGCCGCAAGACCGTCACGGCCATGGACGTCGTGTATGCCCTCAAGCGTCAGG 2942794 Query 16671 GCCGTA 16676 |||||| Sbjct 2942793 GCCGTA 2942788 Score = 120 bits (132), Expect = 5e-23 Identities = 174/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || ||||| || |||||||| || ||||||||||| || || Sbjct 2915520 GCGAAGCGTCACCGGAAGGTC-CTTCGCGACAACATCCAGGGCATCACCAAGCCCGCGAT 2915462 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| | ||||| || || ||||| || || | |||| || |||| Sbjct 2915461 CCGGCGTCTGGCGAGGCGTGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 2915402 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||| |||| || || || ||| || || Sbjct 2915401 GAGAGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 2915342 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| ||||| ||||||| ||||||| || | || || || || Sbjct 2915341 GCACGCCCGCCGGAAGACCGTCACTGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 2915282 Query 16672 CCG 16674 ||| Sbjct 2915281 CCG 2915279 Score = 102 bits (112), Expect = 1e-17 Identities = 170/243 (70%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | | || ||||| || |||||||| || || || ||||| || || Sbjct 2892877 GCGAAGCGTCACCGGAAGGTC-CTTCGCGACAACATCCAGGGCATTACGAAGCCCGCGAT 2892935 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | ||||| || || ||||| || || | |||| || |||| Sbjct 2892936 CCGGCGCCTGGCGAGGCGTGGCGGTGTGAAGCGCATCAGCGGTCTCATCTACGAGGAGAC 2892995 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||| |||| || || || || || || Sbjct 2892996 GAGAGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACGTACACGGA 2893055 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | ||||| |||||| ||||||| | ||||| || | || ||||| || Sbjct 2893056 GCACGCCCGCAGGAAGACCGTCACCGCCATGGACGTTGTCTACGCCCTCAAGCGTCAGGG 2893115 Query 16672 CCG 16674 ||| Sbjct 2893116 CCG 2893118 >seq107 Length=1246838 Score = 136 bits (150), Expect = 6e-28 Identities = 194/268 (72%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || ||||||||||| || ||||| |||||||| | Sbjct 238003 CGCGAAGCGGCACCGCAAGGTC-CTCCGGGATAACATCCAGGGGATCACGAAGCCAGCGA 237945 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| | || ||||| || ||||| || ||| ||| |||| || |||| Sbjct 237944 TCCGGCGTTTGGCGAGGCG-GGTGG-GTGAAGCGGATCAGTGGCTTGATCTACGAGGAGA 237887 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | |||| | ||||||||| | ||| || |||| || || || ||| |||| Sbjct 237886 CCAGGGGTGTTCTCAAGATCTTCTTGGAGAATGTGATCCGGGACGCAGTCACCTACACCG 237827 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || |||||||||||| ||||||| ||||||| || | || | || | Sbjct 237826 AGCACGCCCGCCGGAAGACTGTCACCGCCATGGACGTCGTCTACGCCCTCAAGAGGCAGG 237767 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | | ||||| || || |||| Sbjct 237766 GCCGGACACTCTATGGATTCGGTGGTTA 237739 >seq572 Length=472339 Score = 134 bits (148), Expect = 2e-27 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 166743 GCGAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGCATCACCAAGCCTGCCAT 166801 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || ||||| || || ||||| || || | |||| || |||| Sbjct 166802 CCGACGTCTCGCACGGCGTGGCGGCGTGAAGCGCATCAGCGGCCTCATCTACGAGGAGAC 166861 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | |||||||||||| ||| ||| |||| || ||| || ||| ||||| Sbjct 166862 GAGAGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCTGTCACCTACACCGA 166921 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| ||||||| ||||||| || | || || || || Sbjct 166922 GCACGCCCGCCGGAAGACGGTCACCGCCATGGACGTCGTCTACGCCCTCAAGCGCCAGGG 166981 Query 16672 CCG 16674 ||| Sbjct 166982 CCG 166984 Score = 125 bits (138), Expect = 1e-24 Identities = 175/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | || || || || |||||||| || ||||||||||| || || Sbjct 197994 GCAAAGCGCCACCGCAAGGTC-CTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCAT 197936 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| || || |||||||| || |||||| || || | |||| || |||| Sbjct 197935 CCGGCGTCTCGCACGGCGTGGTGGCGTGAAGCGTATCAGCGGTCTCATCTACGAGGAGAC 197876 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | || | ||||||||||| ||| ||| |||| || || || ||| || || Sbjct 197875 GAGAGGCGTGCTCAAGATCTTCCTGGAGAACGTCATCCGCGACGCCGTCACCTACACGGA 197816 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| ||||||| | ||||| || | || || || || Sbjct 197815 GCACGCTCGCCGGAAGACCGTTACCGCCATGGACGTTGTCTACGCTCTCAAGCGCCAGGG 197756 Query 16672 CCG 16674 ||| Sbjct 197755 CCG 197753 >seq40 Length=1851483 Score = 122 bits (134), Expect = 1e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| ||| || || || ||||| || ||||||||||| || ||| Sbjct 1183198 GCGAAGCGCCACCGCAAGGTTCTCCGCGACAATATCCAGGGCATCACCAAGCCGGCGATC 1183139 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || || || || ||||| || ||||| || ||| | |||| || |||| Sbjct 1183138 CGCCGCCTCGCCCGCCGCGGTGGCGTGAAGCGGATCAGTGGCCTTATCTACGAGGAGACC 1183079 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||||||| ||| ||| || | || || || ||| |||||| Sbjct 1183078 CGGGGAGTACTCAAGATCTTCCTCGAGAACGTCATTCGCGACGCCGTCACCTACACCGAG 1183019 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| |||||| ||||||| | ||||| || | || || |||||| Sbjct 1183018 CACGCCCGCCGGAAGACCGTCACCGCCATGGACGTTGTCTACGCCCTCAAGCGCCAAGGC 1182959 >seq5 Length=3255894 Score = 113 bits (124), Expect = 7e-21 Identities = 194/279 (70%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || ||||||||||| || ||||| ||||| || | Sbjct 2320886 CGCGAAGCGGCACCGTAAGGTC-CTCCGGGATAACATCCAGGGGATCACGAAGCCGGCGA 2320828 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||| |||| | | || || || ||||| || || ||| |||| || |||| Sbjct 2320827 TCCGGCGTTTGGCGAGGAGAGGAGGGGTGAAGCGGATCAGCGGCTTGATCTACGAGGAGA 2320768 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 | | ||| | ||||| ||| | ||| || |||| ||||| || || |||| Sbjct 2320767 CCAGGGGAGTTCTCAAGATATTCTTGGAGAATGTGATCCGAGATGCCGTCACATACACCG 2320708 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || ||||| |||||| ||||||| | |||||||| | || | || | Sbjct 2320707 AGCACGCCCGTCGGAAGACCGTCACCGCCATGGACGTGGTCTATGCCCTCAAGAGGCAGG 2320648 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATC 16709 |||| | ||||||| || || |||| |||| ||| Sbjct 2320647 GCCGGACACTTTATGGATTCGGTGGTTAGGGTTCTGATC 2320609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79050736801908