Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq2728 260 2e-64 seq518 131 2e-25 seq916 125 9e-24 seq291 105 8e-18 seq4860 91.5 2e-13 seq71 91.5 2e-13 seq242 89.7 6e-13 seq85 89.7 6e-13 seq27 84.2 3e-11 seq16 84.2 3e-11 >seq2728 Length=129770 Score = 260 bits (288), Expect = 2e-64 Identities = 252/324 (78%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 138443 TGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGA 138502 ||||||||| || ||||||||||||||||| |||||||||||||| | |||||||| || Sbjct 96486 TGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGA 96545 Query 138503 ACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGT 138562 ||||||| || || ||| | || ||||||| ||||| || ||||||||||| Sbjct 96546 CGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGT 96605 Query 138563 TACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCT 138622 ||||||||||| | ||||| ||||||||||| |||||||| ||||| ||||| | Sbjct 96606 CACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTT 96665 Query 138623 TCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTAT 138682 || ||||||||||| ||||| || || | | | | |||| ||| | || | | | Sbjct 96666 ACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTAGT 96725 Query 138683 TGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGA 138742 || || ||||| ||||| || || ||||| ||||| || ||||||||||||||||| || Sbjct 96726 CGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGA 96785 Query 138743 AGATCCTGAATTCGAGACCTTCTA 138766 |||||||||||| ||||| ||||| Sbjct 96786 AGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 131 bits (144), Expect = 2e-25 Identities = 340/508 (67%), Gaps = 38/508 (7%) Strand=Plus/Minus Query 135734 CTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCT 135793 ||||| |||| | ||||||| ||| || || ||| | |||||||| |||||||||||| Sbjct 409756 CTGGGCATGCATCTTTGGATTGTTGTTGCATATTCAACTCCTGTTGCAGCTGCTACTGCT 409697 Query 135794 GTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATT 135853 ||| | || |||||| |||| ||||| |||| |||| ||||| Sbjct 409696 ATTT-CTTGACCTACCCTATTGGTCAAGGAAGTTTCTCTGAT---ATGCC---------- 409651 Query 135854 TCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCT 135913 || ||| || || | |||| | | || ||||||| ||| ||||||| Sbjct 409650 ---------TTGAACAAC-TG--TATTTTAAATG--GATTACAACATCCTCGTGCATCCA 409605 Query 135914 TTCCACATGTTGGGAGTTGCTGGGGTCT-TCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 | ||||||||||| | || || || | | | |||| | ||| |||||| ||||| Sbjct 409604 TCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT-TATTCAGTGCTATCCATGG 409546 Query 135973 ATCTCTTGTC-ACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATG 136031 || |||| | |||| || | | | || || ||| | || || || | | Sbjct 409545 TTC-CTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAATGAGTCTACTAATGAAG 409487 Query 136032 GTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCG 136091 |||| | ||| |||||| || || ||| | || ||||| | ||| |||||||| || | Sbjct 409486 GTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCATGGTTA-TTTG 409428 Query 136092 GTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCT-ACACTTTTTCCTT 136150 | | | |||| |||||||| |||||||| ||| |||| | ||| || || | Sbjct 409427 GCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGTTCCTTAACATTTATTTTTG 409368 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATC--TACGATGGCGT 136208 |||||||||| || || ||||||| ||| ||| || |||||| ||| ||| | | Sbjct 409367 GCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTG--CTTTACGTATCAGTACTATGACTT 409310 Query 136209 TCAACCTCAATGGATTCAACTTCAACCA 136236 ||||||| ||||| ||||| | |||||| Sbjct 409309 TCAACCTAAATGGTTTCAATTCCAACCA 409282 >seq916 Length=298367 Score = 125 bits (138), Expect = 9e-24 Identities = 166/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 138243 TACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGTTCCTGATGTAT 138302 || || ||||||||||||| || ||| || ||| | || || || ||| | || ||| Sbjct 270286 TATAATGCAATCGCATTCTTTGTTCCAATTGCTATTTT-GTTTCTGTATTCTTCATTTAT 270344 Query 138303 CCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGA 138362 || |||||||||| |||||||||||||| ||| ||||| ||||| || || || Sbjct 270345 CCACTGGGTCAATCTAGTTGGTTCTTTGCACCCA-----GGTGTTGCAGCTATATTTTGA 270399 Query 138363 TTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGC 138422 ||| | | ||| | || || || ||||| |||| | ||||| |||||| ||| || Sbjct 270400 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGGA 270459 Query 138423 GTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTA 138471 || || || | | ||| ||||||||| || ||||||||||||||| Sbjct 270460 GTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 270508 >seq291 Length=752601 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 138313 AATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGT 138372 |||| ||||||||||||| ||| ||| || ||||| || || |||||| | | | Sbjct 473238 AATCTGGTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCT 473179 Query 138373 TCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTA 138432 || | || || || ||||| |||| | ||||| |||||||||||||| | | || Sbjct 473178 TCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAG 473119 Query 138433 TTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAA 138480 | | |||| | ||||||| || ||||||||||||||||| |||||| Sbjct 473118 TATTAGGTGCTACTCTGCTATGCGCTATTCATGGTGCTACCATAGAAA 473071 >seq4860 Length=43173 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 138683 TGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGA 138742 ||| || ||||| ||||| | || ||||| ||| | | |||||||| |||||||| | Sbjct 9556 TGGCCTGGCTCTGAACCTCCATGCTTATGACTTCATTTTCCAAGAAATCCGTGCAGCGAA 9497 Query 138743 AGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTT 138782 |||||||||||| ||||| ||||||||||| || || ||| Sbjct 9496 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCTT 9457 >seq71 Length=1438040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/153 (75%), Gaps = 5/153 (3%) Strand=Plus/Plus Query 138352 CAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCTTTC 138411 |||| ||| ||||| | |||||| | || | || | ||| ||||| | ||| | |||| Sbjct 1356518 CAATTTTC-GATTCATCTTGTTCTTCCAAGAGTTTCGTAATTGGACATTGAACTCATTTC 1356576 Query 138412 ATATGATGGGCGT-AGCAG-GTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTGC 138469 |||| ||||| || | | | ||||| || | ||||||||| || ||||||||||||| Sbjct 1356577 ATATAATGGGGGTTATCGGAGTATTA--GGCGCTGCTCTGCTATGCACTATTCATGGTGC 1356634 Query 138470 TACAGTAGAAAATACTTTGTATGAAGATGGCGA 138502 || |||||||||| ||| | |||||||| || Sbjct 1356635 TATCGTAGAAAATATTTTATTCGAAGATGGTGA 1356667 >seq242 Length=908417 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 || |||||||| | | ||||||||||| |||| ||||| ||||||| | ||| | Sbjct 334992 ATATGGGAAGCGTGATATATTGATGAGTGGTTATACAATGGCA-TCCTTATGAGCTAATT 334934 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | |||||| | | | | | | ||||||||||| ||||||||| | || Sbjct 334933 GTTCTACACTTCTTACTTGATCTAGCTTGGTACATGGGTCGTGAGTGGGAAGTTAGTTTT 334874 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 | || |||| | | ||| ||| ||| || || ||||| |||||| || ||| | || Sbjct 334873 TGCCTATGTATATGTCTTTGAATTGTTGTTGCATATTCAGCTCCTGTTACCACTGTTGCT 334814 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGG 135816 ||||||| |||||||||| |||| Sbjct 334813 ATTGTTTTCTTGGTCTACCCTATTGG 334788 >seq85 Length=1476802 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 135890 GAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGT 135949 ||||||||||| || |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 645554 GAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGC 645613 Query 135950 TCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCT 135986 || || ||| |||||||||||| || | || |||| Sbjct 645614 TCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT 645650 >seq27 Length=2012675 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/83 (83%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||| ||||||||||| ||||| ||||| || || || ||||||||| |||| || Sbjct 1262127 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCAT-GTTATTTT 1262185 Query 136091 GGTCGTCTGATCTTCCAATATGC 136113 || || |||||||||||||||| Sbjct 1262186 GGCCGATTGATCTTCCAATATGC 1262208 >seq16 Length=2636605 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/244 (68%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 135587 GCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATAT 135646 ||||| || | || ||| | || | |||||||| || ||| ||||||||||| ||||| Sbjct 307781 GCCATTGGTTTGCATTTCCACCCAACATGGGAAGCAGCATCTATTGATGAGTGGTTATAT 307722 Query 135647 AATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATG 135706 ||||| ||||| ||| | ||| | || | || ||| | | |||| | ||||||| Sbjct 307721 AATGGCGGTCCATATGAGCTAATTGTTCTACATTTCTTATTTCGTGTAGCTTGTTACATG 307662 Query 135707 GGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCG----- 135761 || || |||||| | | | | ||||||| ||||||||| | | | Sbjct 307661 AATCATAAGCAGGAACT-TAGTTTCTATCAGGTATGCATCCTTGGATTGCTATTGCATAT 307603 Query 135762 ---CTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGAC 135818 | || || || ||| |||| ||||||| |||| ||||| || |||| || || | | Sbjct 307602 TGCCATATTCGGCTCCTATTGCAGCTGCTATTGCTATTTTCTTGATCTATCCTATTAGTC 307543 Query 135819 AAGG 135822 |||| Sbjct 307542 AAGG 307539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627757976102400