Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq518 113 1e-20 seq85 91.5 4e-14 >seq518 Length=568097 Score = 113 bits (124), Expect = 1e-20 Identities = 235/345 (68%), Gaps = 4/345 (1%) Strand=Plus/Minus Query 19810 ACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTC 19869 |||| ||||| ||||||| | |||||| | |||| || || |||| | | || Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACT-TC 409566 Query 19870 TT-TTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAG 19928 || ||| |||||| || || |||| || | | | ||||||||||| ||| | Sbjct 409565 TTATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 19929 GATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTC 19988 ||| || || | || |||| ||| | |||| || || || |||||||||| Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 19989 GCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGT 20048 | ||| || || || ||||| ||||| | || ||||||||| |||||| |||||| || Sbjct 409445 GGTGCCCATGGTTA-TTTGGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 20049 T-CTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGG 20107 | ||| |||||| ||| | ||| ||| | | || || || | | | || | | | Sbjct 409386 TCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACG 409327 Query 20108 AATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCA 20152 ||| | |||||| |||||||||| |||||||| || | ||||| Sbjct 409326 TATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCA 409282 >seq85 Length=1476802 Score = 91.5 bits (100), Expect = 4e-14 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 19796 ATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGT 19855 ||||||| |||||||| |||||||||||||| || |||||| | ||||| ||||| || Sbjct 645544 ATTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGT 645603 Query 19856 ATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 |||||| || || || ||| ||||||||| || Sbjct 645604 ATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 645636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144395706931536