Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq2163 93.3 5e-14 seq1863 89.7 6e-13 >seq2163 Length=162151 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 |||||||||||| || || |||||| | || | || |||||||| || ||||| || Sbjct 135435 GATGATTGGTTATGAAGGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTT 135376 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 |||| |||||| | || | ||||||||||| |||| | ||||| || || |||||| Sbjct 135375 CCTTATGCTTATTTCGCTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGG 135316 Query 171927 TACACACATGGTATTG 171942 || || ||||| |||| Sbjct 135315 TATACCCATGG-ATTG 135301 >seq1863 Length=177779 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/148 (75%), Gaps = 3/148 (2%) Strand=Plus/Plus Query 171795 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 171854 ||||| || | |||||| ||||| ||| | ||||| || || | || ||||||||| Sbjct 42067 TTTGATATTATGGATGATGGGTTACGGAGGAACCGTTT-GTTTTG-TAGGCTGGTCTGGT 42124 Query 171855 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 171914 || || || || |||||||||| |||| | |||||||||||| |||| || | ||| Sbjct 42125 CTATTGCTCTTTTCTTGTGCTTATTTAGCTTTAGGAGGTTGGTTCATAGGTACAATTTTT 42184 Query 171915 GTGACCTCATGGTACACACATGGTATTG 171942 || || |||||||| || |||| |||| Sbjct 42185 GTAACTTCATGGTATACCTATGG-ATTG 42211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570078073599840