Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq782 84.2 2e-11 seq195 84.2 2e-11 seq26 84.2 2e-11 >seq782 Length=366579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/147 (73%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| || || ||||| || |||||||||||| | |||| || || ||||| | ||| Sbjct 137962 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTGGAA 138021 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | | || || |||||||||||||| || || | |||||||| | Sbjct 138022 GATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTTTTA 138081 Query 26982 AGACTTAGAGGAGGAAAAATATGATTA 27008 || ||||| || |||| | ||||||| Sbjct 138082 AGGCTTAG-GGTGGAACA--ATGATTA 138105 >seq195 Length=1014778 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/228 (68%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| || || || | || || ||||| || ||||| |||| || ||||| | Sbjct 873939 CTGGTAGTCCCCGACCCTCTTCTCGAAAAAGTTCGTCTTCCCCTGGAGCGATATCAACTC 873880 Query 119702 CATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAG 119761 ||| | ||||| ||||| || | | | ||| || | |||||| | ||| || Sbjct 873879 CATCCAATCGAACGGATTGGCTGCCCCGTACAACTTCCCGCA-CCCAACGCCCCCAAGAG 873821 Query 119762 TCGATCTGCCACAAACTCGATGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGC 119821 ||||| ||||| |||||||||||||||| ||| | | | |||||| |||| || || Sbjct 873820 CCGATCCGCCACGAACTCGATGTATTCGCTCATCAAATCCCCATTCATCCCCACCAGCGC 873761 Query 119822 GACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 ||||| || || | | | ||| ||| | || |||||||| || || Sbjct 873760 CACCGGCAACGCGTCGCAGACGAACTCCCTCTCGATGTCGACAGCGTC 873713 >seq26 Length=2273700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| |||||||| ||||| || || Sbjct 490809 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGACCAG 490868 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || ||||||| | || || || || || |||| | | | | ||| ||||| || Sbjct 490869 CAGAGGCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGGCGTACCCT-AGCAGACTACAA 490927 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || |||||||| ||| | ||||| |||||| | ||| | || || Sbjct 490928 CATCCAGAAAGAATCCACTCTTCATCTTGTCCTGCGCCTTCGTGGTGG 490975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478502311360320