Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq94 98.7 3e-15 seq28 95.1 3e-14 >seq94 Length=1461416 Score = 98.7 bits (108), Expect = 3e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || ||||| || | |||||| | ||| | |||||| | || | Sbjct 1163784 ATGAAAGATGATAGTATTGAGGGAATATATGACACTTTGAAGGAATGTGCTGTCATAAGC 1163843 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 ||| ||| || ||||||||||| || | || ||| | |||| ||||| |||||| || Sbjct 1163844 AAGTCTGCTGGAGGAATTGGTGTTTCAGTTCATAATATACGTGCCACAG-GCAGTTATAT 1163902 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || ||||| | ||||| ||||| || |||||| | |||| Sbjct 1163903 TCGTGGGACAAATGGAACTTCTAATGGCATTGTTCCAATGCTGCGGGTGTTTAATGATAC 1163962 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 ||| | || || || || || ||||| ||| Sbjct 1163963 TGCTCGTTATGTTGATCAAGGGGGAGGCAAG 1163993 >seq28 Length=2151574 Score = 95.1 bits (104), Expect = 3e-14 Identities = 157/220 (71%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| || ||||| |||| |||||| || ||| | |||||| | || | Sbjct 705452 ATGAAAGATGATAGTATTGAGGGAATCTATGACACTCTGAAGGAATGTGCTGTCATAAGC 705511 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 ||| |||||| ||||||||||| || | || ||| | || | ||||| ||||| || Sbjct 705512 AAGTCTGCAGGAGGAATTGGTGTTTCAGTTCATAATATACGAGCCACAG-GTAGTTATAT 705570 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || ||||| | || || ||||| || |||||| | |||| Sbjct 705571 TCGTGGGACAAATGGAACTTCAAATGGCATTGTGCCGATGCTGCG-GTGTTTAATGATAC 705629 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || || ||||| ||| | |||||| Sbjct 705630 TGCTCGTTATGTTGATCAAGG-GGAGGGAAGAG-AAAGGG 705667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302906795723192