Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq782 82.4 7e-11 seq167 82.4 7e-11 >seq782 Length=366579 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/146 (73%), Gaps = 3/146 (2%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| || || ||||| || |||||||| ||| |||||| || || || || | ||| Sbjct 137962 GACAAGGAGGGTATACCCCCAGATCAACAAAGATTGATTTTCGCTGGAAAACAGTTGGAA 138021 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| | ||| | | ||||| |||||||||||||| || ||| | ||| | || ||| Sbjct 138022 GATGGCCGAACCTTGGCTGATTACAACATTCAAAAAGAGTCAACATTGCATCTGGTTTTA 138081 Query 24204 AGATTGAGAGGAGGACTATAATGATT 24229 || | || || ||| | ||||||| Sbjct 138082 AGGCTTAG-GGTGGA--ACAATGATT 138104 >seq167 Length=1102902 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | || |||||| | Sbjct 191576 ATGCAGATATTCGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCG 191517 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| |||||| || || ||||| || || || || || Sbjct 191516 GACACGATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAAGGTATTCCGCCGGACCAG 191457 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || ||| |||||||| || || | | | | || |||||||||| Sbjct 191456 CAGCGTCTGATCTTCGCCGGAAAGCAACTTGAGGACGGTCGCACCCTCGCCGATTATAAC 191397 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||||||| ||||| | ||| | ||| Sbjct 191396 ATCCAAAAAGAGTCTACTCTCCATCTGGTG 191367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429795802707180