Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 seq167 93.3 3e-14 seq1259 87.8 1e-12 seq26 86.0 5e-12 seq281 82.4 6e-11 >seq4 Length=3455462 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| ||||| || || |||| ||| | | ||| Sbjct 2201059 AGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCC 2201118 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| ||| || || ||| | || | ||||| |||||| ||| | ||| || ||||| Sbjct 2201119 TCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 2201178 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTC-CG-TTTCCACGGTGATGG 16901 ||||| |||||| | | | | |||| ||| |||| || || | ||||||| Sbjct 2201179 TGAATTTTAGCCTTCACGTTGTCAATCGTGT--CCGAGCTCTCGACCTCAAGAGTGATGG 2201236 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || || || |||||||| |||||||| Sbjct 2201237 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 >seq167 Length=1102902 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | || || |||||||||||||| ||||| || ||||| Sbjct 191578 CCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCGGCG 191637 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| || ||||| || | || || ||||| |||||| || Sbjct 191638 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 191697 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||||||| || || || || ||| || | | | | ||||| | ||| Sbjct 191698 ATGCCCTCTTTATCCTGGATCTTGGC--CTTGACGTTGTCGATCGTGTCCGACGACTCGA 191755 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || ||||| || || ||||| || |||||||| Sbjct 191756 CCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 191804 >seq1259 Length=190105 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || ||||| |||||||| | ||| | |||| Sbjct 49455 AGGACTAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCT 49396 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| || | |||||||||||| Sbjct 49395 TCGAGCTGTTT-CCGGCGAAGATGAGGCGCTGCTGGTCC-GGGGGATGCCCTCTTTGTCC 49338 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| || ||| || | |||||||| Sbjct 49337 TGGATCTTGGC--CTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGG 49280 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || ||||| || || || || |||||||| ||| Sbjct 49279 TCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATCTTG 49242 >seq26 Length=2273700 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||| || |||||||||||||| ||||||||||| ||| Sbjct 453460 CCCCCACGAAGGCGCAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCCGCC 453401 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||| | || || || ||| ||||||||| ||| || || || Sbjct 453400 AGGGTACGCCCATCCTCAAGCTGCTTCCCGGCA-AAATAAGCCTCTGCTGATCAGGGGGG 453342 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || || ||| || | | | ||||| | |||| Sbjct 453341 ATCCCTTCCTTGTCCTGGATCTTGGC--CTTGACATTATCAATGGTGTCCGAGCTCTCCA 453284 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||| || || ||||| || || || ||||||||||| Sbjct 453283 CTTCCAGAGTGATGGTCTTCCCAGTCAGGGTCTTCAC-AAAATCTGCAT 453236 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||| || || || |||||| | ||||||||||| || Sbjct 490748 CCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTT-GAATGTTGTAGTCCGC 490690 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | |||||||| ||||| || ||| | || || ||||| || ||| || Sbjct 490689 CAACGTGCGCCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGTGG 490630 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| || || || || || ||| || | | | | ||||| | ||| Sbjct 490629 GATGCCCTCCTTATCCTGGATCTTAGC--CTTTACATTGTCAATGGTGTCAGAGCTCTCT 490572 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| ||||| || || || || ||||| |||||||| Sbjct 490571 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 490522 >seq281 Length=803475 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/205 (70%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || || ||||| ||||| | || | ||||||| | ||| Sbjct 255156 TGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCAAGAGTCCGGCCGTCCTCAAGCTGT 255097 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || |||| ||| |||||| || | |||||| ||||| || || Sbjct 255096 TTTCCGGCGAAGATTAGCCTCTGCTGGTCC-GGGGGATGCCCTCCTTGTCCTGGATCTTG 255038 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | ||||| || ||| || | ||||||||| || |||| Sbjct 255037 GC--CTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGG 254980 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| Sbjct 254979 TGAGGGTCTTGACGAAGATCTGCAT 254955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404955905360440