Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2335 113 6e-20 seq94 95.1 2e-14 seq28 82.4 1e-10 >seq2335 Length=105124 Score = 113 bits (124), Expect = 6e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 || || ||||| | || | ||| || | |||| |||| ||||||||||||| || ||| Sbjct 21880 CCCCCTTGATCAACATAACGAGCAGTATCATTAAAAACCCTCAACATTGGAACGATGCCA 21939 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| ||||| ||||| |||||| || ||| | ||||||||||| | ||| Sbjct 21940 TTGGATGTCCCATTTGTCCCACGGATATAACTACCAGTTGCACGAATATTGTGAGCAGAT 21999 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || | ||| || || ||| || | || || ||||| |||||||| ||| Sbjct 22000 ATGCCAACTCCTCCAGCAGATTTGCTTATAACAGCACACTCCTTTAAAGTATCATATATG 22059 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || |||||||| ||||| || | || |||||| Sbjct 22060 CCCTCAATGCTATCATCTTTCATGCAAACCAAGAAGCAGCTA 22101 >seq94 Length=1461416 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | ||| || | |||| | || | || |||||||| ||| || Sbjct 1163987 TCCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCC 1163928 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| || || ||||| ||||| ||||| || || ||||||| |||||| || ||| Sbjct 1163927 ATTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGA 1163868 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || || || | || ||| || || || ||||| || Sbjct 1163867 AACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATAT 1163808 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||||| ||||||||||| ||||| Sbjct 1163807 TCCCTCAATACTATCATCTTTCATG 1163783 >seq28 Length=2151574 Score = 82.4 bits (90), Expect = 1e-10 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 63224 TTTCCTCCC--TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 || |||||| ||||| | || | ||| || | |||| | || | || ||| || | || Sbjct 705658 TTCCCTCCCCTTGATCAACATAACGAGCAGTATCATTAAACAC-CGCAGCATCGGCACAA 705600 Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA 63341 | ||||| || || ||||| ||||| ||||| || || |||| || |||||| || Sbjct 705599 TGCCATTTGAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCTCGTATATTATGAA 705540 Query 63342 TTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 63401 ||| | ||| ||||| ||||| || || | || ||| || | || |||| Sbjct 705539 CTGAAACACCAATTCCTCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTGTCAT 705480 Query 63402 AGATGCCCTCTATACTATCATCCATCATG 63430 |||| ||||| ||||||||||| ||||| Sbjct 705479 AGATTCCCTCAATACTATCATCTTTCATG 705451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633420081777600