Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq26 125 6e-24 seq281 105 6e-18 seq4 105 6e-18 seq62 87.8 2e-12 >seq26 Length=2273700 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| |||| || || ||||||| | ||||| || ||| Sbjct 441374 ATGCAGATCTTTGTTAAGACTCTGACTGGCAAGACCATCACCCTTGAAGTTGAAAGCTCT 441433 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || ||| ||||| || || || || || |||||| Sbjct 441434 GATACAATCGATAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCTCCAGACCAA 441493 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || ||||||| ||||||||||| | || |||| |||||| ||| || ||||| Sbjct 441494 CAGAGGCTTATTTTCGCCGGCAAACAGCTTGAGGATGGTCGCACACTGGCTGACTACAAC 441553 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || ||||| ||| | || || Sbjct 441554 ATTCAGAAAGAGTCGACGCTCCATCTTGTTCT 441585 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||||||| || Sbjct 490749 ATGCAGATTTTTGTGAAGACCCTCACTGGGAAGACCATCACTTTGGAAGTGGAGAGCTCG 490808 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| |||||||| || |||||||| Sbjct 490809 GACACCATCGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCTGACCAG 490868 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || | || |||| || || | | || ||||| Sbjct 490869 CAGAGGCTCATTTTTGCTGGTAAGCAGCTTGAGGATGGGCGTACCCTAGCAGACTACAAC 490928 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||| | || || Sbjct 490929 ATCCAGAAAGAATCCACTCTTCATCTTGTCCT 490960 Score = 102 bits (112), Expect = 7e-17 Identities = 153/214 (71%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||||||||| | || || || ||||||| |||| || ||| ||| Sbjct 442557 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTCGAGGTAGAGAGCTCT 442616 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| |||||| || || || || || ||||| || | Sbjct 442617 GACACCATTGA--CAATGTAAAGGCTAAAATCCAGGATAAGGAGGGCATCCCACCAGATC 442674 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | |||||| | || ||||| || |||| | || |||| ||||| ||| || |||| Sbjct 442675 AGCAGCGGCTCATCTTTGCTGG-TAACAGCTGGAGGATGGGCGCACGCTGGCAGACTACA 442733 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | |||||||| ||||| || || ||||| || || Sbjct 442734 ACATTCAAAAGGAATCTACTCTTCATTTGGTCCT 442767 >seq281 Length=803475 Score = 105 bits (116), Expect = 6e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 24995 AACA-ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 |||| ||||| || || || ||||| | ||||| || ||||||| |||| || |||| Sbjct 254722 AACAGATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGT 254781 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | || ||||| ||||| | ||| || ||| ||||| || || || || || | Sbjct 254782 CCTCGGACACGATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATACCCCCGG 254841 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| || || |||| || |||||||| || | || || | || ||| | | ||||| Sbjct 254842 ACCAGCAACGTCTTATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGGACTCTCGCCGATT 254901 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 ||||||| |||||||| ||||| || || Sbjct 254902 ACAATATCCAAAAAGAGTCCACCCTCCA 254929 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| |||| || ||||| || Sbjct 254955 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 255014 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || || || ||||| Sbjct 255015 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCC-CCGGACCAG 255073 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || ||||| ||||| | || || | || ||| | | |||||||||| Sbjct 255074 CAGAGGCTAATCTTCGCCGGAAAACAGCTTGAGGACGGCCGGACTCTTGCCGATTACAAT 255133 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 255134 ATCCAGAAGGAGTCCACCCTCCA 255156 >seq4 Length=3455462 Score = 105 bits (116), Expect = 6e-18 Identities = 146/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || |||||||| || Sbjct 2201723 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGTCCTCG 2201664 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| ||| ||| ||||| || || || || || ||||| Sbjct 2201663 GATACCATTGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 2201604 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || |||| |||||| ||| ||| |||||| Sbjct 2201603 CAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACTCTGGCCGACTACAAT 2201544 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 |||| ||| |||||||| || || Sbjct 2201543 ATTC-AAAGGAATCCACCCTTCA 2201522 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || | | ||||||| | || || ||| ||| Sbjct 2201496 ATGCAGATCTTCGTGAAGACCCTCACGGGAAGA-CCATCACCCTGGAGGTCGAGAGCTCT 2201438 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || ||||| || ||||| Sbjct 2201437 GACACCATTGATAATGTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCC-CCGGACCAG 2201379 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| ||| | || |||| ||||| ||| ||||| ||| Sbjct 2201378 CAGAGGCTGATCTTTGCCGGCAAGCAACTGGAGGATGGCCGCACCCTGGCTGATTATAAT 2201319 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || ||| | || || Sbjct 2201318 ATCCAGAAGGAATCTACACTCCATCTCGTCCT 2201287 >seq62 Length=1642893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || ||||| || || || || || || | |||||||| || ||||| || ||| Sbjct 1294621 GACAAGGAGGGGATACCCCCAGATCAGCAAAGGTTGATTTTTGCTGGGAAACAGTTGGAA 1294562 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||| || | | |||||||||||||||||||| || || || || | || | Sbjct 1294561 GATGGTCGAACCCTAGCTGATTACAATATTCAAAAAGAGTCAACTCTTCACCTCGTTTTG 1294502 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || || |||| Sbjct 1294501 AGGCTTAGGGGTGGAA 1294486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433186696614140