Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq2728 210 2e-49 seq518 134 2e-26 seq916 127 2e-24 seq291 91.5 2e-13 >seq2728 Length=129770 Score = 210 bits (232), Expect = 2e-49 Identities = 245/331 (74%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 167871 TAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAG 167930 |||||| ||| |||| | || || ||||||| ||| ||||| |||||| | | |||| Sbjct 96479 TAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAG 96538 Query 167931 ATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATT 167990 ||||||| ||||| || ||| || ||| | | ||||| | || || ||||||| Sbjct 96539 ATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATT 96598 Query 167991 CCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGC 168050 | ||||||||||||||||| || ||||| ||||| ||||| ||||||| |||||| Sbjct 96599 CAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAAT 96658 Query 168051 GTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTG 168110 ||||||| || ||||||||||| || || || || | | | |||| ||| || || Sbjct 96659 GTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTC 96718 Query 168111 GTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAG 168170 | | |||| || || || || || |||||||||||||| || || || ||| || | | Sbjct 96719 GGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTG 96778 Query 168171 CAGCAGAGGATCCAGAGTTTGAAACTTTCTA 168201 |||| || ||||| || ||||| |||||||| Sbjct 96779 CAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 134 bits (148), Expect = 2e-26 Identities = 242/351 (69%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 166681 GAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 166740 || |||||| ||| ||||||| || | ||||| | || |||||| || || || Sbjct 409517 GAAACCACTAAAAATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACT 409458 Query 166741 TACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTC 166800 | || || || | ||| |||||||| || || | | |||| ||||| ||| ||| Sbjct 409457 CATAATATTGTAGGTGCCCATGGTTATTT-GGCAGATTTGTCTTACAATATGCTAGTTTC 409399 Query 166801 AACAACTCTCGCTCGCTG-CACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 ||||| ||| | || | || || || | || || |||| || || ||||||| ||| Sbjct 409398 AACAATTCTTGTTCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTT 409339 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 |||||| | || | || || ||| | |||||||| || |||||||| | |||||| | Sbjct 409338 AACTGCTTTACGTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAAC 409279 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979 | | || ||||||| ||| | | || | | | ||| || |||| | || | Sbjct 409278 TAATGTAGACAATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAA 409219 Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGA 167030 | | ||||||||||||| | || |||||||||||||||||||||| || Sbjct 409218 GTTTGATATGGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGA 409168 >seq916 Length=298367 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 167677 TTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTA 167736 ||| ||||| || || || | || ||| |||||| | ||||| ||||| || |||| || Sbjct 270285 TTATAATGCAATCGCATTCTTTGTTCCAATTGCTAT-TTTGTTTCTGTATTCTTCATTTA 270343 Query 167737 TCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAG 167796 ||| || || || || ||||||||||||||||| ||||||||||| |||||| | Sbjct 270344 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACCCA-----GGTGTTGCAGCTATATTTTG 270398 Query 167797 ATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGG 167856 |||| | || ||| | || || || ||||| |||| | | ||||| || ||| ||| || Sbjct 270399 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGG 270458 Query 167857 AGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTA 167906 |||||| || | |||| ||| |||| | | || ||||||| || Sbjct 270459 AGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 270508 >seq291 Length=752601 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 167754 GTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTAC 167813 ||||||||||||| || ||| || ||||| |||||| ||||| | || ||| | | Sbjct 473232 GTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCTTCTTCC 473173 Query 167814 AGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAG 167873 | || || ||||| |||| | | ||||| || |||||||||||| ||| ||| | ||| Sbjct 473172 AAGGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAGTATTAG 473113 Query 167874 GCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGA 167913 | | | | |||| | || || ||||||| ||| |||| Sbjct 473112 GTGCTACTCTGCTATGCGCTATTCATGGTGCTACCATAGA 473073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567042289257600