Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq859 118 2e-21 seq100 95.1 2e-14 seq785 91.5 3e-13 seq223 91.5 3e-13 seq78 91.5 3e-13 seq112 89.7 1e-12 seq269 87.8 4e-12 seq16 87.8 4e-12 seq3 87.8 4e-12 seq232 86.0 1e-11 seq558 84.2 4e-11 seq56 84.2 4e-11 >seq859 Length=348630 Score = 118 bits (130), Expect = 2e-21 Identities = 374/570 (66%), Gaps = 21/570 (4%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| || ||||||||||| ||||| ||||||||| | || || ||||| | || Sbjct 128426 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACC 128367 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||||||||| | ||| ||||| |||||||| | | ||||| || Sbjct 128366 ACGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGC 128307 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAACGACTTGTCCTGCGACAAGA---ACTTCTGTGC 252020 | ||||||| |||||||| || || ||| || ||| || || | || Sbjct 128306 GGCAAATGCAACGAGGCGCTCGGCGAAAGAC---TCGGAGGACTCGATCCACCGGAGGGC 128250 Query 252021 CCATGCTGCCTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCG 252080 |||| ||||||||| ||||| |||| || |||| || | || || | | || Sbjct 128249 CCATTGGGCCTTCTTTGTCACCGCCGGGACGGTCTCGACGGC-GCGAAAAG-GCGATCTT 128192 Query 252081 CTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGA 252140 ||| | |||| |||| | || || ||||| ||||||||||| || |||||| Sbjct 128191 TTCGTCCGGATCCTTGATGTAGGATTCGAGGAGGAGGGAGTACATCTCGGAGTGGATGTT 128132 Query 252141 TTCGTTGAACATCTGGTAAGCATAGAATAGACGCG-----CGGAAGGGTCGGTGACTTCC 252195 ||| || |||||| | | |||| || |||| ||| || || | ||| || Sbjct 128131 CTCGATGGCGATCTGGAAGCCGTAGA--AGGCGCGAGCCTCGG--GGATCTG-GACGTCG 128077 Query 252196 GTGGAAAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCA 252255 | ||| | || | |||||| | || ||||| ||| | | || |||||| | Sbjct 128076 GACATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCG 128017 Query 252256 AGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCA-AT 252314 || ||| ||| ||||| ||||| ||| | |||| ||| |||||| || | || Sbjct 128016 AGGATGTGGGAGATAAAGTGGCGCTCGTCGGTGGTGAGGGTGTGGAGCCAGTGGGGAGAT 127957 Query 252315 GTCCTGATTCAGAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | || ||| || || || | |||||||| | || || |||||||||||||| Sbjct 127956 CGCTGGA--GAGATCGACCTCCTCGGCGGTCCAGAAGGAGGCGACGGCCTTCTTGTACAT 127899 Query 252375 TGCGAACACATCAGGGTACTTGATTGGGAA 252404 | |||| |||||| ||| ||||| Sbjct 127898 CTCCCACACCGGAGGGTAGCGGATGGGGAA 127869 >seq100 Length=1334691 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||| ||||| ||| |||| ||||| || ||| ||| | ||||||||| |||||||||| Sbjct 680631 AGGTTGCTCAATTTGCTGGCTATGTTTCGGAACATTCAGCCTACCATCATGGTGAGCAGA 680572 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 |||| | ||||| | || ||||| || || | ||| || || |||||||| ||| Sbjct 680571 GTCTTGCTAGCACCATTATTGGAATGGCTCAAGATTTTGTTGGTAGCAACAACATAAACC 680512 Query 218777 TGCTGCTCCCCAACGGTCAGTTTGG 218801 | |||| || || || || ||||| Sbjct 680511 TTCTGCAACCTAATGGACAATTTGG 680487 >seq785 Length=346551 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 116430 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 116489 Query 142564 CCCAC 142568 ||||| Sbjct 116490 CCCAC 116494 >seq223 Length=929638 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 411517 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 411576 Query 142564 CCCAC 142568 ||||| Sbjct 411577 CCCAC 411581 >seq78 Length=1440308 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 324741 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 324800 Query 142564 CCCAC 142568 ||||| Sbjct 324801 CCCAC 324805 >seq112 Length=1333301 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||| Sbjct 625037 TAGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 625096 Query 142562 GCCCCAC 142568 ||||||| Sbjct 625097 GCCCCAC 625103 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||| ||||||||||| || ||||||| || |||||||||||||||||| Sbjct 817165 GCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 817106 Query 142564 CCCAC 142568 ||||| Sbjct 817105 CCCAC 817101 >seq269 Length=736261 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||| ||||||| || ||||||| || ||||||||||||||||| Sbjct 473548 AGCCCGTCTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 473607 Query 142563 CCCCAC 142568 |||||| Sbjct 473608 CCCCAC 473613 >seq16 Length=2636605 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1055917 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1055976 Query 142563 CCC 142565 ||| Sbjct 1055977 CCC 1055979 >seq3 Length=3667290 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||| ||||||||||| || ||||||| || ||||||||||||||| Sbjct 3223353 ATTGCCCGTCTAGCTCAGCCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 3223294 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 3223293 AGCCCCAC 3223286 >seq232 Length=898664 Score = 86.0 bits (94), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 293442 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 293501 Query 142564 CC 142565 || Sbjct 293502 CC 293503 >seq558 Length=490607 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| | ||||||||| ||||||| Sbjct 317942 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCCTGTGGTCGTGAGTTCGAG 317883 Query 142563 CCCCAC 142568 |||||| Sbjct 317882 CCCCAC 317877 >seq56 Length=1646278 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1491864 AGCCCGTCTAGCTCAGCTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1491923 Query 142563 CCCCAC 142568 |||||| Sbjct 1491924 CCCCAC 1491929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027484445981796