Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq297 127 2e-24 seq26 104 2e-17 seq4 95.1 1e-14 seq167 89.7 4e-13 >seq297 Length=752846 Score = 127 bits (140), Expect = 2e-24 Identities = 147/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || |||||||||||||| || || || ||| |||||||| || ||| Sbjct 218129 GTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCATCCTCAAGTTGCTTTCCA 218070 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| ||||| || ||||| ||||| ||||||| || Sbjct 218069 GCAAAGATAAGACGCTGCTGGTCTGGAGG-ATTCCTTCCTTGTCCTGAATCTTTGCCTTG 218011 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| | || || |||| || | ||| || || |||||||| Sbjct 218010 ACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCTGTCAGAGTC 217951 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 217950 TTGACAAAGATCTGCAT 217934 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || | || | || |||||||| ||||||||||| || Sbjct 218386 ACCACCACGGAGACGCAGGACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCTGC 218327 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| ||| ||| || || || || || || ||||||| ||||| || || || || Sbjct 218326 AAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCAGGGGG 218267 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||||||| || | | |||| |||||| | || || Sbjct 218266 TATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTATCAATGGTGTCAGAACTCTCCAC 218207 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || || || || | ||| || ||||| |||||||| Sbjct 218206 CTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACAAAGATCTGCAT 218159 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || |||||||| ||||||||||| ||| || || ||| ||| ||||| || || || Sbjct 217902 GTGGACTCTTTTTGGATGTTGTAATCTGCTAAT-GTGCGACCATCCTCAAGCTGCTTCCC 217844 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | || || ||||| || || || || ||||| || || || ||||||| ||| Sbjct 217843 AGCAAATATCAGGCGCTGCTGATCAGGTGGGATGCCCTCCTTATCCTGAATCTTTGCTTT 217784 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | | || || || | ||| | || || || || || || Sbjct 217783 CACATTATCAATGGTGTCTGAGCTCTCAACCTCAAGGGTGATAGTCTTCCCTGTAAGGGT 217724 Query 114365 TTTTACAAAAATCTGCATG 114383 || | || ||||||||| Sbjct 217723 CTTGATGAAGATCTGCATG 217705 >seq26 Length=2273700 Score = 104 bits (114), Expect = 2e-17 Identities = 164/231 (71%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | |||||||| ||| |||||||||| || Sbjct 453237 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTT-GAATGTTGTAGTCT 453179 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || |||| |||||| ||||||||||||| || || || Sbjct 453178 GCCAGTGTGCGCCCATCCTCCAGCTGTT-ACCAGCAAAGATGAGACGCTGCTGATCTGGT 453120 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || || || ||||| |||| | ||||||||||||| | || Sbjct 453119 GGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACATTGTCAACGGTGTCGGAGCTCTCT 453060 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || ||||| ||||| || ||||| ||||||||| Sbjct 453059 ACCTCAAGGGTGATGGTCTT-CCGGTAAGAGTCTTCACAAAGATCTGCATG 453010 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 |||| | ||| | ||| | ||| || ||||| ||||||||||| || || || ||| Sbjct 441591 AGTCGGAGAACAAGATGGAGCGTCGACTCTTTCTGAATGTTGTAGTCAGCCAGTGTGCGA 441532 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 ||| ||||| ||||| || ||| | || || | ||||||||| ||||| ||||| || Sbjct 441531 CCATCCTCAAGCTGTTTGCCGGCGAAAATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCC 441472 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| ||||| || | | || | || || | | ||| || || | ||| Sbjct 441471 TTGTCTTGGATCTTGGCCTTCACATTATCGATTGTATCAGAGCTTTCAACTTCAAGGGTG 441412 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || ||||| |||||||| || ||||| |||||||| Sbjct 441411 ATGGTCTTGCCAGTCAGAGTCTTAACAAAGATCTGCAT 441374 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/231 (70%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | |||||||| ||| |||||||||| || Sbjct 490750 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTT-GAATGTTGTAGTCC 490692 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || | ||||||||||| ||||||||||||| || ||||| Sbjct 490691 GCCAACGTGCGCCCATCCTCCAACTGTTTACCAGCAAAGATGAGACGCTGCTGATCCGGT 490632 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || || || ||||| |||| | |||| |||||| | | || Sbjct 490631 GGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCT 490572 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || || || || || || ||||| ||||||||| Sbjct 490571 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAGATCTGCATG 490521 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| ||||| || | || || | ||| | || |||||||| || |||||||| || || Sbjct 490976 ACCACCACGAAGGCGCAGGACAAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCTGC 490917 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | | ||||| ||| ||||| || |||||||| | ||||| | ||| ||||| |||| Sbjct 490916 T-AGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCAGGAG 490858 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 | || ||||| ||||| ||||| || | | || | |||||| | | || | Sbjct 490857 GGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTATCGATGGTGTCCGAGCTCTCCA 490798 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | || || || || || || || |||||||||||||| Sbjct 490797 CTTCCAAAGTGATGGTCTTCCCAGTGAGGGTCTTCACAAAAATCTGCAT 490749 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | |||||||| |||||||||||||| || Sbjct 442785 ATCCCACCACGAAGGCGGAGGACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCT 442726 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || |||||||| ||||||| ||||| || || || Sbjct 442725 GCCAGCGTGCGCCCATCCTCCAGCTG-TTACCAGCAAAGATGAGCCGCTGCTGATCTGGT 442667 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || || || || || |||| | |||| |||||| | | || Sbjct 442666 GGGATGCCCTCCTTATCCTGGATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCT 442607 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || || || || || |||||||| ||||||||| Sbjct 442606 ACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCATG 442556 >seq4 Length=3455462 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || ||||| ||||| ||||| || || || ||| || ||||| || ||| Sbjct 2201074 GTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTCCAGTTGCTTTCCA 2201133 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | |||||| |||||||||||||||||||| ||||| ||| || || Sbjct 2201134 GCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATTTTAGCCTTC 2201193 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | ||||| || | || | || || || || || || Sbjct 2201194 ACGTTGTCAATCGTGTCCGAGCTCTCGACCTCAAGAGTGATGGTCTTCCCAGTGAGGGTC 2201253 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 2201254 TTGACAAAGATCTGCAT 2201270 >seq167 Length=1102902 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||||||||| |||||| | || || ||||| || || || || Sbjct 191608 GTGGACTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCG 191667 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| |||||||| |||||||| || ||||| ||||| || ||||| || Sbjct 191668 GCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 191727 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | || ||||| |||| || | || |||||||| || || Sbjct 191728 ACGTTGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTC 191787 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 191788 TTGACGAAGATCTGCAT 191804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419997398898672