Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq859 313 5e-80 seq195 266 6e-66 >seq859 Length=348630 Score = 313 bits (346), Expect = 5e-80 Identities = 440/606 (73%), Gaps = 14/606 (2%) Strand=Plus/Plus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| || ||||||||||||||||| |||||||| ||| |||||||| ||| | | | Sbjct 128010 ACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCT 128069 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 ||||| || || ||| | ||||| ||| |||||||||||||||||| ||||| | Sbjct 128070 TCATGTCCGACGTCCAGATCCCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCG 128129 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 ||||| | ||||| ||| ||||| || || ||| | | |||||| |||||| | || Sbjct 128130 AGAACATCCACTCCGAGATGTACTCCCTCCTCCTCGAATCCTACATCAAGGATCCGGACG 128189 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGCGGAC 42656 | | || || ||| | || | ||||| | ||| || | | |||||||| | Sbjct 128190 AAAAGATCGC-CTTTTCGCG-CCGTCGAGACCGT-CCCGGCGGTGACAAAGAAGGCCCAA 128246 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| ||| ||||||||| |||| | |||| |||| | || || || ||| Sbjct 128247 TGGGCCCTCCGGTGGATCGAGTCCTCCGAGTCT---TTCGCCGAGCGCCTCGTTGCATTT 128303 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 ||||||| ||||| ||||||||||| ||| ||||| ||| ||||||||||||||| || Sbjct 128304 GCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCCTTCTGCTCTATCTTCTGGCTCAAGAAG 128363 Query 42777 -AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 ||| || ||||| || ||||||||||| ||||| |||||| | | |||||||| || Sbjct 128364 CGTGGTCTC-ATGCCGGGGCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCT 128422 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGA 42895 || | ||||| ||||||||||| | ||| || ||||| | ||||| |||| |||| Sbjct 128423 CCACTGCGACTTCGCCTGCCTCCTCTACTC---CCTCCTCAACCGCAAGCTCTCGGAGGA 128479 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 || || | | |||||| | || || ||||| || |||| ||||||| | || | | Sbjct 128480 CCGCATCAAGTCGATCATCGCCGACGCTGTGGACATTGAGAGGGAGTTCGTTGCG-ACGC 128538 Query 42956 GCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGT 43015 |||||| ||| | ||||| || |||||| || | ||| || ||||||| ||| ||| Sbjct 128539 GCTGCCGGTGGCGCTGGT-GGGATGAACGGGGATTTGATGAGCCAGTACATTGAGTTCGT 128597 Query 43016 CGCCGA 43021 || || Sbjct 128598 GGCGGA 128603 >seq195 Length=1014778 Score = 266 bits (294), Expect = 6e-66 Identities = 498/720 (69%), Gaps = 14/720 (2%) Strand=Plus/Plus Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||||||||| |||||||| ||| |||||||| |||||| | |||||| || Sbjct 873232 CTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCACCCGCTTCATGTCCGA 873291 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 || ||| ||||| ||| |||||||||||||||||||||||| || ||| | || Sbjct 873292 CGTCCAGATTGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATAGCCATCGA-AACATCCA 873350 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGG 42607 ||| ||| |||| | |||| | | |||||| || || | ||| | || Sbjct 873351 CTCCGAGATGTATTCTCTTTTGCTGGAATCCTACATCAAAGACCCTGACGAAAAGACCGC 873410 Query 42608 GCTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGCGGACTGGGCGCTCA 42666 || ||| | | | |||||| | ||| || | ||||||||| | ||||||||| Sbjct 873411 -CTTTTCGTG-CTGTCGAGACGGT-CCCGGCGGTGGCGAAGAAGGCCCAGTGGGCGCTCC 873467 Query 42667 ACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 ||||| ||| | ||| | |||| ||| | || || ||||| | || || | Sbjct 873468 GGTGGATTGAGTCCTCGGACTCC---TTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTG 873524 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCG 42785 |||| ||||||||||| ||| ||||| |||||||||||||||||| || || || Sbjct 873525 AGGGGATCTTCTTCTCCGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTC- 873583 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 ||||| || || |||||||| ||||| |||||| | | |||||||| || || | ||| Sbjct 873584 ATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGAC 873643 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGG 42905 || ||||||||||| | ||| || ||||| ||||||| | | |||| || || | Sbjct 873644 TTCGCCTGCCTCCTCTACTC---CCTCCTCAACCACAAGCTCCCTGAGGACCGCATCAAG 873700 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 | |||||| | || || || || ||||||| ||||||| || | || |||| ||| Sbjct 873701 TCAATCATCGCCGACGCTGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGTTGCCGGTG 873760 Query 42966 TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCAT 43025 | ||||| || ||||| || | ||| || | |||||| ||| ||| || || | Sbjct 873761 GCGCTGGTGGGGATGAATGGGGATTTGATGAGCGAATACATCGAGTTCGTGGCGGATCGG 873820 Query 43026 CTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATG 43085 ||| || | | ||||| | | | ||| | | || ||||| | ||| Sbjct 873821 CTCTTGGGGGCGTTGGGT-GCGGGAAGTTGTACGGGGCAGCCAATCCGTTCGATTGGATG 873879 Query 43086 GAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| || ||| | |||| ||||| ||||||||||||||| | |||| ||||||||| Sbjct 873880 GAGTTGATATCGCTCCAGGGGAAGACGAACTTTTTCGAGAAGAGGGTCGGGGACTACCAG 873939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944023365754560