Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq297 86.0 5e-12 >seq297 Length=752846 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/149 (73%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| | || || |||| ||||| ||| ||| || || |||||||||||||| Sbjct 217932 CCACCTCTTAATCGGAGGACCAAGTGAAGAGTGGACTCTTTTTGGATGTTGTAATCTGCT 217873 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || || | ||||| || ||||||||||||||||||||||| || Sbjct 217872 AATGTGCGACCATCCTCAAGCTGCTTCCCAGCAAATATCAGGCGCTGCTGATCAGGTGGG 217813 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| || ||| | | | ||||||| Sbjct 217812 ATGCCCTCCTTATCC-TGAATCTTTGCTT 217785 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 19/233 (8%) Strand=Plus/Minus Query 33904 CCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAAT 33963 || || || || || ||||| || | || |||||| || ||||| || |||||||| Sbjct 217702 CCCCTTAGGCGGAGAACCAGGTGCAAGGTCGACTCCTTTTGGATGTTATAGTCTGCCAAG 217643 Query 33964 TGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACG 34023 || | || ||||| ||||| || ||||| |||||||||||||||| || | | Sbjct 217642 GTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATCAGGCGCTGCTGAT-CAGGTGGATC 217584 Query 34024 CTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCAT 34080 | |||||||||| | | | || |||| ||||| ||||| | | || || Sbjct 217583 CCCTCTTTGTCC-TGAATCTTAGCTT--------TCACATTATCAATGGTGTCTGAGCTC 217533 Query 34081 TCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||| || ||||| || || || || || ||||||||||| ||||| Sbjct 217532 TCAACCTCAAGGGTGATTGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 217480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396932922418312