Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq195 147 3e-30 seq859 118 1e-21 seq199 86.0 7e-12 >seq195 Length=1014778 Score = 147 bits (162), Expect = 3e-30 Identities = 191/261 (73%), Gaps = 5/261 (2%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| ||| || |||||||| || Sbjct 873637 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 873578 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | ||| || || || ||||||||||| ||||| ||| Sbjct 873577 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 873518 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 | ||| || | ||| ||||| || |||||| ||| | |||| |||| | ||| Sbjct 873517 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGA---GGACTCAATCCACCGGAGCGC 873461 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 |||||| ||||| ||| | | |||||| |||| || || | || || | |||| Sbjct 873460 CCACTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGC-ACGAAAAG-GCGGTCTT 873403 Query 126298 TTCTGATGGATCTTTGATGTA 126318 ||| || ||||||||||| Sbjct 873402 TTCGTCAGGGTCTTTGATGTA 873382 >seq859 Length=348630 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| |||||||| ||||||||||| || || |||||| || || ||||||||||| Sbjct 128426 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACC 128367 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 |||||||| | |||||| || | || || || || ||||||||||| ||||| || Sbjct 128366 ACGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGC 128307 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || || |||| ||| ||||| || || || Sbjct 128306 GGCAAATGCAACGAGGCGCTCGGCGAAAGA 128277 >seq199 Length=986226 Score = 86.0 bits (94), Expect = 7e-12 Identities = 226/337 (67%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 10820 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 10879 || |||||||| || || || || || || |||| || || || | ||||| Sbjct 367559 TCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTTCAAAC 367618 Query 10880 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATA 10939 ||||||||||||||||| || ||||| | |||||||| | ||||||||| | | | Sbjct 367619 CCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--ACCTC 367676 Query 10940 CCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACG 10997 | | || | | | |||| | || || || ||||| ||||| | |||| ||| || | Sbjct 367677 CAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCA-CAAAATGATGCAAG 367735 Query 10998 GTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCAC 11055 | ||| || ||| |||| ||| | ||| ||||||| ||||| ||||| || Sbjct 367736 GCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAAC 367793 Query 11056 AAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCG 11114 |||||| || ||||| | | | | ||| |||| || || || || | |||||| | Sbjct 367794 AAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCAG 367852 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | || || ||| || | || ||||| || || || Sbjct 367853 CAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 367889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597153815088480