Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq281 120 3e-22 seq26 114 1e-20 seq630 113 5e-20 seq167 111 2e-19 seq4 107 2e-18 seq328 104 3e-17 seq1259 100 3e-16 seq297 95.1 1e-14 >seq281 Length=803475 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| ||||| ||||||||||| || |||||||| |||| || |||||||| || ||||| Sbjct 254918 CTCTTTTTGGATATTGTAATCGGCGAGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 254859 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | || | || |||||||||| || | || | | | ||| Sbjct 254858 GATAAGACGTTGCTGGTCCGGGGGTATGCCCTCCTTGTCC-TGGATCTTGGCCTTAACGT 254800 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| ||||| || || ||||| | Sbjct 254799 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 254740 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 254739 CGAAGATCTGCAT 254727 Score = 116 bits (128), Expect = 4e-21 Identities = 144/193 (75%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||||||||| || |||||||| |||| || ||||| || || ||||| Sbjct 255145 CTCCTTCTGGATATTGTAATCGGCAAGAGTCCGGCCGTCCTCAAGCTGTTTTCCGGCGAA 255086 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 255085 GATTAGCCTCTGCTGGTCCG-GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 255028 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| ||||| || || ||||| | Sbjct 255027 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 254968 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 254967 CGAAGATCTGCAT 254955 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/196 (73%), Gaps = 10/196 (5%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||||||| || |||||||||| || ||||||| | |||| || || ||||| || ||||| Sbjct 256013 CTCCTTTGGA-TATTGTAATCCGCGAGAGTCCTC-CGTCCTCCAGTTGCTTCCCGGCGAA 255956 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||| | || | | |||||| ||| ||| || || | ||| Sbjct 255955 GATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTGGATCTTCGCCTTCA-CGT 255897 Query 42137 CGCCACC-GTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | || ||||| |||| ||||| |||| ||||| || || ||||| || |||| Sbjct 255896 TGTCAATAGTGTCCGAGCTC---TCCACCTCGAGGGTGATCGTCTTACCCGTGAGAGTCT 255840 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||||||||| Sbjct 255839 TCACGAAGATTTGCAT 255824 >seq26 Length=2273700 Score = 114 bits (126), Expect = 1e-20 Identities = 154/212 (73%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || ||||||||||| ||||| || ||||| || ||| | || || Sbjct 442764 ACCAAATGAAGAGTAGATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCC 442705 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 ||||| |||||||| || ||||| |||||||| || | ||| | || |||||| ||| | Sbjct 442704 AGCTG-TTACCAGCAAAGATGAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGG 442646 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 ||||| || | | | | ||||| |||| || || |||| |||||||| Sbjct 442645 ATTTTAGCCTTTACATTGTCAATGGTGTCAGAGCTC---TCTACCTCGAGGGTGATGGTC 442589 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || |||||||||||||| ||||| Sbjct 442588 TTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 442557 Score = 86.0 bits (94), Expect = 7e-12 Identities = 90/117 (77%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| ||||| ||||| ||||||||||||| || || | || || Sbjct 490502 ACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAATCAGCCAATGTTCGGCCATCCTCA 490443 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 |||||||| ||||| || ||||| | ||||||||||| || | || |||||||||| Sbjct 490442 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGG-AGGGATGCCCTCCTTGTCC 490387 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || || || ||||| || || || || ||| | || || |||||||||||||| || Sbjct 490939 TCTTTCTGGATGTTGTAGTCTGCTAGGGTACGCCCATCCTCAAGCTGCTTACCAGCAAAA 490880 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| | ||||||||| | || | | ||||||||| ||| || |||| | Sbjct 490879 ATGAGCCTCTGCTGGTCAGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACATTA 490820 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | ||||| |||| ||||| || | |||||||| || || || || ||||| Sbjct 490819 TCGATGGTGTCCGAGCTC---TCCACTTCCAAAGTGATGGTCTTCCCAGTGAGGGTCTTC 490763 Query 42195 ACAAAGATTTGCAT 42208 ||||| || ||||| Sbjct 490762 ACAAAAATCTGCAT 490749 >seq630 Length=471042 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || |||||||| || || || || |||| || |||||||| || ||||| Sbjct 35908 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 35967 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | ||| | || |||||||||| ||| || |||| ||| Sbjct 35968 GATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 36026 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || | |||| || || || || ||||| || ||||| | Sbjct 36027 TGTCGATGGTGTCGGAGGACTCTGCCTCGAGGGTAATAGTCTTCCCCGTGAGGGTCTTCA 36086 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 36087 CGAAGATCTGCATGTT 36102 >seq167 Length=1102902 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| || ||||| || || || || |||| || |||||||| || ||||| Sbjct 191613 CTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAA 191672 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | || ||| || ||| ||| || |||| ||| Sbjct 191673 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGA-CGT 191731 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||| || || || | |||||||| ||||| || || ||||| | Sbjct 191732 TGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGA 191791 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 191792 CGAAGATCTGCAT 191804 >seq4 Length=3455462 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 42022 TTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGA 42081 ||||||||||||| || |||||||| || | || || |||||||| || || || || | Sbjct 2201537 TTTGAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCA 2201596 Query 42082 GTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CC 42140 ||||||||||| | || | || |||||||||| ||| ||| |||| ||| | | Sbjct 2201597 AACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGA-CGTTGTCA 2201655 Query 42141 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 42200 | || || || ||||| || | |||||||| ||||| || || ||||| || ||| Sbjct 2201656 ATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAG 2201715 Query 42201 ATTTGCAT 42208 || ||||| Sbjct 2201716 ATCTGCAT 2201723 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 |||||| || | || ||||||||| || || ||||| ||||| || || | || || Sbjct 2201061 CACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTC 2201120 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||| ||||| || || | ||||||||||| | || | || ||||||||| | Sbjct 2201121 CAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC-T 2201179 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || |||| | | ||| | | | |||||| |||| || || || | ||||||| Sbjct 2201180 GAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTC---TCGACCTCAAGAGTGATGG 2201236 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || || || || ||||| |||||||| ||||| Sbjct 2201237 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 >seq328 Length=735707 Score = 104 bits (114), Expect = 3e-17 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| || || || || || | || ||||||||||| || ||||| Sbjct 4870 CTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTCTAGCTGCTTTCCGGCGAA 4929 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || |||||||| || | ||| | || ||||||||| ||| || |||| ||| Sbjct 4930 GATAAGGCGCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 4988 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| ||||| || ||||| || || ||||| | Sbjct 4989 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGA 5048 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 5049 C-AAGATCTGCATCTT 5063 >seq1259 Length=190105 Score = 100 bits (110), Expect = 3e-16 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || || || || || || || || |||| || ||||| || || ||||| Sbjct 49435 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTT-CCGGCGAA 49377 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| ||||||||||| | || | || ||| |||||| ||| || |||| ||| Sbjct 49376 GATGAGGCGCTGCTGGTCCG-GGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGT 49319 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| || || || |||| |||||||| |||||||| || ||||| | Sbjct 49318 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCA 49259 Query 42196 CAAAGATTTGCATTTT 42211 | ||||| ||||| || Sbjct 49258 CGAAGATCTGCATCTT 49243 >seq297 Length=752846 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/220 (71%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||| || || || ||||| ||||| |||||||| ||||| || || | Sbjct 218146 CGCATCACCAAGTG-AAGGTAGATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCA 218088 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || || ||||| ||||| || || || ||||||||||| | || | | |||||| Sbjct 218087 TCCTCAAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCTGGAGG-ATTCCTTCCTTG 218029 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGT 42169 ||| ||| | |||| |||| | | | ||||| |||| ||||| || | || Sbjct 218028 TCC-TGAATCTTTGCCTTGACATTATCAATGGTGTCGGAGCTC---TCCACCTCCAAAGT 217973 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || || || || || ||||| |||||||| |||||| Sbjct 217972 GATCGTCTTCCCTGTCAGAGTCTTGACAAAGATCTGCATT 217933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543031122479040