Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq195 122 9e-23 seq297 102 8e-17 seq26 95.1 1e-14 seq4 89.7 5e-13 seq155 86.0 6e-12 >seq195 Length=1014778 Score = 122 bits (134), Expect = 9e-23 Identities = 297/447 (66%), Gaps = 6/447 (1%) Strand=Plus/Plus Query 52392 GCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCC 52451 || |||||| | ||||||||| | || ||||| | || || |||||| ||| Sbjct 873494 GCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCCTTCTGT 873553 Query 52452 GCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTG 52511 ||||||| | | || | | ||| | ||||| || ||||| ||| ||||||| | Sbjct 873554 TCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAACGAGCTC 873613 Query 52512 ATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTG 52571 || || |||||||| || || ||| ||||| || |||||| |||| | | | | Sbjct 873614 ATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGCCTGCCTCCTCTACT---CCCTCCTC 873670 Query 52572 ACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAA 52631 | | | || | | |||| ||| | || || || || || | ||||| Sbjct 873671 AACCACAAGCTCCCTGAGGACCGCATCAAGTCAATCATCGCCGACGCTGTCGACATCGAG 873730 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATG 52691 | |||||| | | |||| ||||||| | |||| |||| ||||| | | | | ||| Sbjct 873731 AGGGAGTTCGTCTGCGACGCGTTGCCGGTGGCGCTGGTGGGGATGAATGGGGATTTGATG 873790 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTA 52750 |||| ||||||||||| ||||||||||| || |||| | | | || || | |||| Sbjct 873791 AGCGAATACATCGAGTTCGTGGCGGATCGGCTCTTGGGGGCGTTGGGTGCGG--GAAGTT 873848 Query 52751 CTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAA 52810 | | || ||||||||| || | ||| | || ||||| |||| ||||| || Sbjct 873849 GTACGGGGCAGCCAATCCGTTCGATTGGATGGAGTTGATATCGCTCCAGGGGAAGACGAA 873908 Query 52811 CTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||||||||||| | ||||| || || Sbjct 873909 CTTTTTCGAGAAGAGGGTCGGGGACTA 873935 >seq297 Length=752846 Score = 102 bits (112), Expect = 8e-17 Identities = 142/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||| || || || || ||||| ||||| || || | | Sbjct 218126 GATTCCTTCTGAATGTTGTAATCTGCCAGCGTGCGTCCATCCTCAAGTTGCTTTCCAGCA 218067 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| |||||||| ||||| ||||| || ||||| ||||| ||| | |||| || | Sbjct 218066 AAGATAAGACGCTGCTGGTCTGGAGG-ATTCCTTCCTTGTC-CTGAATCTTTGCCTTGAC 218009 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||||| ||||||||| | || | ||| || || |||||||| || Sbjct 218008 ATTATCAATGGTGTCGGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCTGTCAGAGTCTT 217949 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 217948 GACAAAGATCTGCAT 217934 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || |||||||||||||| | ||| || ||||| || || || |||| Sbjct 218354 TTGATTCTTTCTGAATGTTGTAGTCTGCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGG 218295 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTT 138537 | |||| || ||||| || || || ||||| || || ||||| ||| | ||||| || Sbjct 218294 CAAAGATGAGGCGCTGCTGATCAGGGGGTATGCCCTCCTTGTC-CTGAATCTTTGTCTTC 218236 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | |||||| | ||||||||| | || | || || || || | ||| Sbjct 218235 ACATTATCAATGGTGTCAGAACTCTCCACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTC 218176 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 218175 TTAACAAAGATCTGCAT 218159 >seq26 Length=2273700 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| || || ||| ||||| || || ||||| | | Sbjct 442749 GATTCCTTTTGAATGTTGTAGTCTGCCAGCGTGCGCCCATCCTCCAGCTG-TTACCAGCA 442691 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || || || || || || || || || |||||| |||| | Sbjct 442690 AAGATGAGCCGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGGATTTTAGCCTTTACA 442631 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | ||| ||||||| || | || || ||||| || || || Sbjct 442630 TTG-TCAATGGTGTCAGAGCTCTCTACCTCGAGGGTGATGGTCTTTCCAGTGAGGGTCTT 442572 Query 138600 TACAAAAATCTGCATG 138615 |||||| ||||||||| Sbjct 442571 TACAAAGATCTGCATG 442556 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 138428 TTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTA 138487 |||||||||||||||| || || ||| ||||| | |||||||| | | |||| | Sbjct 490708 TTTGAATGTTGTAGTCCGCCAACGTGCGCCCATCCTCCAACTGTTTACCAGCAAAGATGA 490649 Query 138488 GACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCC 138546 ||||||| || ||||| || || || || || || ||| || |||| |||| || Sbjct 490648 GACGCTGCTGATCCGGTGGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACATTG-TCA 490590 Query 138547 ACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 | |||||| | ||| ||||| | || | || || ||||| || || || ||||| Sbjct 490589 ATGGTGTCAGAGCTCTCTACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTCACAAAG 490530 Query 138607 ATCTGCATG 138615 ||||||||| Sbjct 490529 ATCTGCATG 490521 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 138428 TTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTA 138487 |||||||||||||||| || || ||| ||||| || || ||||| | | |||| | Sbjct 453195 TTTGAATGTTGTAGTCTGCCAGTGTGCGCCCATCCTCCAGCTG-TTACCAGCAAAGATGA 453137 Query 138488 GACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCC 138546 ||||||| || || || || || || || || || ||| || |||| |||| || Sbjct 453136 GACGCTGCTGATCTGGTGGGATGCCCTCCTTATCCTGGATCTTAGCCTTTACATTG-TCA 453078 Query 138547 ACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 |||||||||| ||| ||||| | || | || || || || ||||| || ||||| Sbjct 453077 ACGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTT-CCGGTAAGAGTCTTCACAAAG 453019 Query 138607 ATCTGCATG 138615 ||||||||| Sbjct 453018 ATCTGCATG 453010 >seq4 Length=3455462 Score = 89.7 bits (98), Expect = 5e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 138428 TTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTA 138487 ||||||| ||||||||| || ||| || |||||||| || || |||| | |||| | Sbjct 2201537 TTTGAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCA 2201596 Query 138488 GACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCA 138547 |||||| ||||| || || || || || ||||| ||| ||| || | | || | Sbjct 2201597 AACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCAA 2201656 Query 138548 CGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAA 138607 ||| || | ||||||||||| | || | || || ||||| || || || || || | Sbjct 2201657 TGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGA 2201716 Query 138608 TCTGCAT 138614 ||||||| Sbjct 2201717 TCTGCAT 2201723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||| || || || || || ||||| ||||| || || | | Sbjct 2201077 GACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCA 2201136 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | |||||| ||||||||||| || ||||| ||||| ||| |||| | || | Sbjct 2201137 AAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTC-CTGAATTTTAGCCTTCAC 2201195 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||||| | ||| ||||| | || | || || ||||| || || | Sbjct 2201196 GTTG-TCAATCGTGTCCGAGCTCTCGACCTCAAGAGTGATGGTCTTCCCAGTGAGGGTCT 2201254 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 2201255 TGACAAAGATCTGCAT 2201270 >seq155 Length=1009872 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| || | ||| | || | || | | | |||||||| ||||||||||||||| Sbjct 940181 GCCGCCGCGGAGACGAAGGACGAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCGGC 940240 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || || |||| |||| || ||||| || || || || Sbjct 940241 GAGGGTCCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGATCTGGGGG 940300 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||||| |||||||| Sbjct 940301 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATTGTGTCGGAAGACTCCAC 940360 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||| | || | || || || || || || || || || |||||||||| Sbjct 940361 CTCAAGGGTGATTGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATGG 940410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496096425040320