Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq167 122 8e-23 seq4 102 7e-17 seq1259 98.7 9e-16 seq281 87.8 2e-12 >seq167 Length=1102902 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| ||||| || || || || |||||||| ||||||||| Sbjct 191347 ATCCCTCCACGGAGGCGGAGCACCAGATGGAGAGTAGACTCTTTTTGGATGTTATAATCG 191406 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | ||| ||||| ||| | |||| || |||||||||||| Sbjct 191407 GCGAGGGTGCGACCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGC 191466 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| ||||||||||| || |||| || | || | ||||| || ||| Sbjct 191467 GGAATACCTTCCTTATCTTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGCTCTC 191525 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | || | || |||||||| || || || || || || ||||| Sbjct 191526 GACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAATATCTGCAT 191576 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | || || || || || || |||||||| || ||||||||| Sbjct 191575 ATGCCTCCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTATAATCG 191634 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| || |||| || || || ||| | |||| || ||||||||||| Sbjct 191635 GCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGG 191694 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| |||||||| || || || |||| || | || | ||||| || ||||| Sbjct 191695 GGGATGCCCTCTTTATCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTC 191753 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || | ||| | || |||||||| || || || || || || |||||| Sbjct 191754 GACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 191805 >seq4 Length=3455462 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | ||| | || || || || ||||||||||| |||||||| Sbjct 2201044 CCACCACGGAGGCGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCC 2201103 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||| ||| ||||| || | ||||| || ||||||||||| ||| Sbjct 2201104 AGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGA 2201163 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 |||||||| || || |||||||| || | || | || | ||||| || |||||| Sbjct 2201164 ATGCCTTCCTTGTCCTGAATTTTAGCCTTCA-CGTTGTCAATCGTGTCCGAGCTCTCGAC 2201222 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || || || || || || || ||||| || ||||| Sbjct 2201223 CTCAAGAGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 >seq1259 Length=190105 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| |||||||| | | |||||||| || || || ||||| ||||| ||||| ||| Sbjct 49471 TCCACCGCGGAGGCGGAGGACTAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGC 49412 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| || || | ||||| || ||| | || | || ||||||||||| || Sbjct 49411 GAGGGTGCGGCCGTCTTCGAGCTGTTT-CCGGCGAAGATGAGGCGCTGCTGGTCCGG-GG 49354 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| ||||| || || || || |||| || | || | ||||| || ||||||| Sbjct 49353 GATGCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 49295 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | ||||| || | || ||||| || ||||| || || || || |||||| Sbjct 49294 CCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATC 49245 >seq281 Length=803475 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || || || || || || || ||||||||||| |||||| Sbjct 254956 ATGCCACCGCGGAGACGGAGGACGAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCG 254897 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || || || | || || || ||| | || | |||||||||||||| Sbjct 254896 GCGAGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGACGTTGCTGGTCCGGG 254837 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || | | || | | | || | || | ||||| || ||||| Sbjct 254836 GGTATGCCCTCCTTGTCCTGGA-TCTTGGCCTTAACGTTGTCGATCGTGTCCGAGGACTC 254778 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| ||||| || | || |||||||| || || || || || || |||||| Sbjct 254777 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATC 254726 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || || || |||||| ||||||| ||||| Sbjct 256051 ATCCCACCACGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTT-GGATATTGTAATCC 255993 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || |||| ||| || || ||| | |||| | |||||||||||| Sbjct 255992 GCGAGAGTCCTCCG-TCCTCCAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGC 255934 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || ||||| || || || || | || | || | ||||| || ||| Sbjct 255933 GGAATCCCCTCCTTATCCTGGATCTTCGCCTTCA-CGTTGTCAATAGTGTCCGAGCTCTC 255875 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | ||| || || || ||||| || || || ||||||||| Sbjct 255874 CACCTCGAGGGTGATCGTCTTACCCGTGAGAGTCTTCACGAAGATTTGCATC 255823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451852027529760