Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq2728 203 4e-47 seq518 145 9e-30 seq916 136 5e-27 seq291 100 4e-16 seq85 98.7 1e-15 >seq2728 Length=129770 Score = 203 bits (224), Expect = 4e-47 Identities = 244/332 (73%), Gaps = 0/332 (0%) Strand=Plus/Minus Query 6374 TAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAA 6433 ||||| ||||| || || ||||| |||||||| | || ||||| ||||| ||||||||| Sbjct 96809 TAGAAAGTCTCAAATTCAGGATCTTCCGCTGCACGAATTTCTTGGGAAACGAAGTCATAA 96750 Query 6434 GCTCTAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACA 6493 || | ||||| || || || || | | | || | |||| | | | | || Sbjct 96749 GCACGGAGGTTCAGAGCCAGGCCGACTACCCGAAGAGCACTCATCCATAAATCGGTTACT 96690 Query 6494 GGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATC 6553 || ||||| |||||||||||||||| ||||| |||||| || || | |||||||| Sbjct 96689 GGTACAAATAGCATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACCCCAAAGATT 96630 Query 6554 TGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCA 6613 || ||||| || || ||||| |||||||| ||||| ||||| || |||| || || | | Sbjct 96629 TGGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTCTCTTCGGCTTGAGTTGGGTTA 96570 Query 6614 AACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCA 6673 || || ||| ||||||| ||||||||||| || |||||||| ||||| |||||| Sbjct 96569 AAAGCACGGAATGTATTTGCACCGTCACCATCTTCGAATAAAGTATTTTCTACGGTAGCA 96510 Query 6674 CCGTGAATAGCACAGAGCAATGCTCCACCTAA 6705 || |||||||| || |||| || | ||||| Sbjct 96509 CCATGAATAGCGCATAGCAGAGCAGCGCCTAA 96478 >seq518 Length=568097 Score = 145 bits (160), Expect = 9e-30 Identities = 407/622 (65%), Gaps = 32/622 (5%) Strand=Plus/Plus Query 7543 GTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACG 7602 ||| |||||||||||||||||||||| || | ||| |||||||| ||| | || | Sbjct 409167 GTCTAGAGGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAACTTACCATG 409226 Query 7603 GTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTT 7662 |||| | || | | || || | | ||| ||| ||| || | | | ||||| Sbjct 409227 ATTGATGATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATTAGTTTGGTT 409286 Query 7663 GAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGAT 7722 | | |||||||| || |||||||| | ||| || || | || | |||||| ||| |||| Sbjct 409287 GGAATTGAAACCATTTAGGTTGAAAGTCATAGTACTGATACGTAAAGCAGTTAACTAGAT 409346 Query 7723 GCCAACAACTGGCCATGCTGCGAGGAAGAAGTG-CAGCGAACGGGAGTTGTTGAACGAAG 7781 || || | |||| || || | || || || | |||| || |||||||| || Sbjct 409347 ACCTACTGCAAGCCAAGCAGCCAAAAATAAATGTTAAGGAACAAGAATTGTTGAAACTAG 409406 Query 7782 CGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTT 7841 | ||||| |||| | | ||||| || || || ||| | || || || | || || | Sbjct 409407 CATATTGTAAGACAAATCTGCCAAA-TAACCATGGGCACCTACAATATTATGAGTTTCGT 409465 Query 7842 CTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCA 7901 | |||||| ||| ||||||| | || |||||| | ||||||||| | || Sbjct 409466 CCACTTGACTGAATCTATAACCTTCATTAGTAGACTCATTTTTAGTGGTTTCCTTGATCA 409525 Query 7902 GAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAA-CCACCAAAGACACCA 7960 || | ||||| | | |||||||| || |||||||| | |||| | | | ||||| Sbjct 409526 AAGTATAGGTTGCCAAGGAACCATGGATAGCACTGAATA-AGAAGTTGCTATATACACCG 409584 Query 7961 GCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGC 8020 || | |||| |||||| | || |||| |||||||||| || || || ||| Sbjct 409585 GCTCCACCCAACATGTGAGATGGATGCACGAGGATGTTGTAATCCATTTAAAATACA--- 409641 Query 8021 ATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCG 8080 || ||| | ||||||| ||||||||| |||||||| Sbjct 409642 --GTTGTTCA-------------------AGGCATA---TCAGAGAAACTTCCTTGACCA 409677 Query 8081 AAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAG 8140 | ||| ||| | ||| | ||||| || || ||||| |||| || ||||| ||| Sbjct 409678 ATAGGGTAGGTCAAGAA-ATAGCAGTAGCAGCTGCAACAGGAGTTGAATATGCAACAACA 409736 Query 8141 ATCCAGGGACGCATACCTAGAC 8162 ||||| || |||| || |||| Sbjct 409737 ATCCAAAGATGCATGCCCAGAC 409758 >seq916 Length=298367 Score = 136 bits (150), Expect = 5e-27 Identities = 172/234 (74%), Gaps = 7/234 (3%) Strand=Plus/Minus Query 6664 TACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCAT 6723 |||| ||||||| ||||||| || |||| || |||||| | || || || || | Sbjct 270512 TACA-TAGCACCATGAATAGTGCATAGCAGAGCAGTACCTAATACTCCGGCAACTCCAGT 270454 Query 6724 CATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAA 6783 || |||||| ||||| | | |||| || || || || || | |||||| | ||| | || Sbjct 270453 CAAATGAAATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCAAAA 270394 Query 6784 TATCGCTGCAACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACAT 6843 ||| ||||||||||| || |||||||||||||| || || || || ||||| || Sbjct 270393 TATAGCTGCAACACC-----TGGGTGCAAAGAACCAACTAGATTGACCCAGTGGATAAAT 270339 Query 6844 GAGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTA 6897 || || ||||| ||||| | |||||| ||| || | || ||||||||||| || Sbjct 270338 GAAGAATACAGAAACAAA-ATAGCAATTGGAACAAAGAATGCGATTGCATTATA 270286 >seq291 Length=752601 Score = 100 bits (110), Expect = 4e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 6662 TCTACAGTAGCACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCC 6721 |||| |||||||| |||||||| || |||| | ||||||| | || | | ||| Sbjct 473073 TCTATGGTAGCACCATGAATAGCGCATAGCAGAGTAGCACCTAATACTCCAACAATTCCC 473132 Query 6722 ATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGG 6781 ||||||||||| ||||| | | |||| || || || || || | |||||| | ||| || Sbjct 473133 ATCATATGAAATGGGTTCAACATCCAATTATGAAACCCTTGGAAGAAGAGGATGAATCGA 473192 Query 6782 AATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAAC 6821 ||||| ||||| || ||| |||||||||||||||| Sbjct 473193 AATATAGCTGCTACGTTAAAATTGGGCGCAAAGAACCAAC 473232 >seq85 Length=1476802 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 7902 GAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAG 7961 || || ||||||| | ||||||||||| |||||||| || || || || || ||||||| Sbjct 645656 GAAAATAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAG 645597 Query 7962 CGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 | || |||| |||||| || || ||||| ||||||||||| || |||||| Sbjct 645596 CTACACCCAACATGTGAAATGGATGCATAAGGATGTTGTGTTCCATTTGGAA 645545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621916730360640