Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq195 143 3e-29 seq859 131 2e-25 seq199 82.4 9e-11 >seq195 Length=1014778 Score = 143 bits (158), Expect = 3e-29 Identities = 193/264 (73%), Gaps = 11/264 (4%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| ||| || |||||||| || Sbjct 873637 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 873578 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | ||| || ||||| ||||||||||||||||| ||| Sbjct 873577 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 873518 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAG--CG-GGACTTTGTATCAAACCACTTCAT 127707 | ||| || | || ||||| || |||||| || |||| |||| |||| | Sbjct 873517 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAGTCCGAGGAC------TCAATCCACCGGAG 873464 Query 127708 CGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 127767 ||||||||| ||||| ||| | | ||||| |||| || || | || || | | Sbjct 873463 CGCCCACTGGGCCTTCTTCGCCACCGCCGGGACCGTCTCGACAGC-ACGAAAAG-GCGGT 873406 Query 127768 CTTTTCTGATGGATCTTTGATGTA 127791 |||||| || ||||||||||| Sbjct 873405 CTTTTCGTCAGGGTCTTTGATGTA 873382 >seq859 Length=348630 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||| |||||||| ||||||||||| || || |||||| || || ||||||||||| Sbjct 128426 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACC 128367 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || ||||||||||||||||||||||| || Sbjct 128366 ACGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGC 128307 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 || || |||| || |||||||| || || Sbjct 128306 GGCAAATGCAACGAGGCGCTCGGCGAAAGA 128277 >seq199 Length=986226 Score = 82.4 bits (90), Expect = 9e-11 Identities = 225/337 (67%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 || |||||||| || || || || || || |||| || || || | || || Sbjct 367559 TCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTTCAAAC 367618 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 ||||||||||||||||| || ||||| | |||||||| | ||||||||| | | | Sbjct 367619 CCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--ACCTC 367676 Query 12855 CCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACG 12912 | | || | | | |||| | || || || ||||| || || | |||| ||| || | Sbjct 367677 CAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCA-CAAAATGATGCAAG 367735 Query 12913 GTTGATTTTCACGGGCAACTTC--AAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 | ||| || ||| |||| ||| | ||| || |||| ||||| ||||| || Sbjct 367736 GCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAAC 367793 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCG 13029 ||||||||| ||||| | | | | ||| |||| || || || || | |||||| | Sbjct 367794 AAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCAG 367852 Query 13030 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || || ||| || | || ||||| || ||||| Sbjct 367853 CAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 367889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613302012516960