Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq859 167 4e-36 seq195 114 2e-20 >seq859 Length=348630 Score = 167 bits (184), Expect = 4e-36 Identities = 417/624 (67%), Gaps = 27/624 (4%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || || ||||| || | | ||||| ||||| | ||||||| | Sbjct 128709 TCTTCTCGAAGAA-TTAGTCTTCCCTTGAAGTGATATCAGCTCCATCCAGTCGAATGGAT 128651 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||| || |||| | |||| | |||| ||| | || || ||||| || | Sbjct 128650 TCGCCACCCCGTACAACTTCCCACATCCCAAAGCCCCCAAGAGCCGATCCGCCACGAACT 128591 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 | ||||| | |||| || | ||| ||||| | |||| || || ||||| || Sbjct 128590 CAATGTACTGGCTCATCAAATCCCCGTTCATCCC-ACCAGCGCCACCGGCAGCGCGTCGC 128532 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 | ||| |||| ||||||| || || || |||| | ||| | || || || | | Sbjct 128531 AACGAA-CTCCCTCTCAATGTCCACAGCGTCGGCGATGATCGACTTGATGCGGTCCTCCG 128473 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 |||||| | | || | | |||||||| || ||||||||||| || |||| Sbjct 128472 AGAGCTTGCGGTTGAGGAGGGAGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGGCCCT 128416 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | |||| |||||||||| |||||| |||| Sbjct 128415 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCACGCTTCTTGA 128356 Query 160008 GCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || || | ||| ||| | || || ||||||||||| ||||| ||||| || Sbjct 128355 GCCAGAAGATAG-AGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCGGCAAATGCA 128297 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 ||||| | ||| | ||||| || || || | |||||| |||||||| ||| Sbjct 128296 ACGAGGCGCTCGGCGAAAGACTCGGAGGACTC---GATCCACCGGAGGGCCCATTGGGCC 128240 Query 160127 TTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAA---CAATCTGTCCTGCTCCTTC 160183 ||||||| | ||| | | |||||||||| ||| | |||| | || | | Sbjct 128239 TTCTTTGTCACCGCCGGGACGGTCTCGACGGCGCGAAAAGGCGATCTTT-----TCGTCC 128185 Query 160184 ACATCCTTGATCAGAGTAGCAATC----AGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 ||||||||| |||| | || || |||||||| || | ||| | || || Sbjct 128184 GGATCCTTGAT----GTAGGATTCGAGGAGGAGGGAGTACATCTCGGAGTGGATGTTCTC 128129 Query 160240 GATGGCCATCTGAAAGTTGTAGAA 160263 |||||| ||||| ||| |||||| Sbjct 128128 GATGGCGATCTGGAAGCCGTAGAA 128105 >seq195 Length=1014778 Score = 114 bits (126), Expect = 2e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 |||||||| || ||||||||||| || |||||||| || ||||||| ||||||||| | | Sbjct 873657 AGGAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAG 873598 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCA-CCGCT 160035 | || |||||||||| || ||| |||||||| || |||| || ||| | ||| Sbjct 873597 GTCAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGAA-CAGAAGGAGCCGGA 873539 Query 160036 AAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || ||||||||||| || || | || |||||||| | ||| Sbjct 873538 GAAGAAGATCCCCTCAACAGCAGAGAAGGCCACGAGGCGCTC 873497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794889260343360