Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4 129 7e-25 seq1259 127 2e-24 seq167 125 8e-24 seq281 120 3e-22 seq630 118 1e-21 seq155 116 4e-21 seq328 114 1e-20 seq26 89.7 6e-13 seq297 86.0 7e-12 >seq4 Length=3455462 Score = 129 bits (142), Expect = 7e-25 Identities = 143/188 (76%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 46407 TTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCA 46466 |||| ||||||||||||| |||||||| | || ||||||||||||||||| || |||| Sbjct 2201537 TTTGAATATTGTAGTCGGCCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCA 2201596 Query 46467 AGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CC 46525 | ||||||||||| | || | || |||||||||| |||||| ||||| ||| | | Sbjct 2201597 AACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGA-CGTTGTCA 2201655 Query 46526 ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAG 46585 | || || || ||||| || | |||||||| ||||| || || || || || ||| Sbjct 2201656 ATGGTATCCGAGGACTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAG 2201715 Query 46586 ATTTGCAT 46593 || ||||| Sbjct 2201716 ATCTGCAT 2201723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| || | ||| |||||||||||| || || || | || ||||| | || || Sbjct 2201061 CACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGGCCATCCTC 2201120 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || ||||| || || || ||||| ||||||||||| | || | || ||||||||| Sbjct 2201121 CAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTG 2201180 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 || || ||| | ||| | | | |||||| |||| || || || | ||||||| Sbjct 2201181 AATTTTAGCCTTCA-CGTTGTCAATCGTGTCCGAGCTC---TCGACCTCAAGAGTGATGG 2201236 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || || || || || |||||||| ||||| Sbjct 2201237 TCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/212 (70%), Gaps = 8/212 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | |||| ||||| |||||||| || || | || ||||| | || || Sbjct 2201290 ACGAGATGGAGTGTAGATTCCTTCTGGATATTATAATCAGCCAGGGTGCGGCCATCCTCC 2201349 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||||||||| || |||| | ||||||||| | || | | ||||||||| | Sbjct 2201350 AGTTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCG-GGGAATTCCCTCCTTGTCTTGG 2201408 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||||| | | | ||||| |||| || || |||| |||||||| Sbjct 2201409 ATCTTAGCCTTGACATTATCAATGGTGTCAGAGCTC---TCGACCTCCAGGGTGATGGTC 2201465 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || ||||| ||||| Sbjct 2201466 TT-CCCGTGAGGGTCTTCACGAAGATCTGCAT 2201496 >seq1259 Length=190105 Score = 127 bits (140), Expect = 2e-24 Identities = 150/198 (76%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||||| || ||||| |||| |||||||| || |||||||| Sbjct 49435 CTCCTTCTGGATGTTATAGTCGGCGAGGGTGCGGCCGTCTTCGAGCTGTTT-CCGGCGAA 49377 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || ||| |||||| |||||| ||||| ||| Sbjct 49376 GATGAGGCGCTGCTGGTCCGGGGG-ATGCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGT 49319 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||||||||| || || | Sbjct 49318 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGAGTCTTCA 49259 Query 46581 CAAAGATTTGCATTTTGC 46598 | ||||| ||||| |||| Sbjct 49258 CGAAGATCTGCATCTTGC 49241 >seq167 Length=1102902 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || || || |||| || ||||| |||| || ||||||||||||||||| Sbjct 191613 CTCCTTTTGAATGTTATAATCGGCGAGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCGAA 191672 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || ||| || ||| |||||| ||||| ||| Sbjct 191673 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTGA-CGT 191731 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| ||| || || |||| |||||||| ||||| || || || || | Sbjct 191732 TGTCGATCGTGTCCGACGACTCGACCTCCAAAGTGATGGTCTTGCCGGTGAGGGTCTTGA 191791 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 191792 CGAAGATCTGCAT 191804 Score = 105 bits (116), Expect = 8e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | ||| ||| |||||||| || || |||| || ||||| |||| || Sbjct 191367 CACCAGATGGAGAGTAGACTCTTTTTGGATGTTATAATCGGCGAGGGTGCGACCGTCCTC 191426 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || ||||| |||||||| |||| ||||||||||| | ||| | | ||||| || Sbjct 191427 AAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGAATACCTTCCTTATCTTG 191486 Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 ||||| ||||| ||| | | | |||||| |||| || || |||| ||||||| Sbjct 191487 AATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGCTC---TCGACCTCCAAGGTGATGG 191542 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| || || || || || || || ||||| Sbjct 191543 TCTTGCCGGTGAGGGTCTTGACGAATATCTGCAT 191576 >seq281 Length=803475 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| |||||||||||||| |||| ||||| || |||| || ||||||||||||||||| Sbjct 254918 CTCTTTTTGGATATTGTAATCGGCGAGAGTCCGGCCGTCCTCAAGCTGCTTGCCGGCGAA 254859 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | || |||||||||| |||||| ||| | ||| Sbjct 254858 GATAAGACGTTGCTGGTCCGGGGGTATGCCCTCCTTGTCCTGGATCTTGGCCTT-AACGT 254800 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| || || || || | Sbjct 254799 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 254740 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 254739 CGAAGATCTGCAT 254727 Score = 113 bits (124), Expect = 5e-20 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| |||| ||||| || |||| || ||||| || |||||||| Sbjct 255145 CTCCTTCTGGATATTGTAATCGGCAAGAGTCCGGCCGTCCTCAAGCTGTTTTCCGGCGAA 255086 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 255085 GATTAGCCTCTGCTGGTCCG-GGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 255028 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| || || || || | Sbjct 255027 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 254968 Query 46581 CAAAGATTTGCAT 46593 | ||||| ||||| Sbjct 254967 CGAAGATCTGCAT 254955 Score = 107 bits (118), Expect = 2e-18 Identities = 156/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | ||| ||||||| |||||||||| || | ||||| | | |||| || Sbjct 256031 CACCAGGTGGAGGGTAGACTCCTTT-GGATATTGTAATCCGCGAGAGTCCTC-CGTCCTC 255974 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || ||||| |||||||| |||| | ||||||||| | ||| | | |||||| ||| Sbjct 255973 CAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCCTCCTTATCCTG 255914 Query 46504 GATCTTCTTCTTGAGCGTCGCCACC-GTGTC---GCTCGATTCCACATCCACCGTGATGG 46559 ||||||| ||| | ||| | || ||||| |||| ||||| || | ||||| | Sbjct 255913 GATCTTCGCCTTCA-CGTTGTCAATAGTGTCCGAGCTC---TCCACCTCGAGGGTGATCG 255858 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || || || || ||||||||||| Sbjct 255857 TCTTACCCGTGAGAGTCTTCACGAAGATTTGCAT 255824 >seq630 Length=471042 Score = 118 bits (130), Expect = 1e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| |||| || ||||| |||| ||||||||||| |||||||| Sbjct 35908 CTCCTTCTGGATGTTGTAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 35967 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | |||||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 35968 GATGAGGCGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 36026 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || | || | || || || || ||||| || || || | Sbjct 36027 TGTCGATGGTGTCGGAGGACTCTGCCTCGAGGGTAATAGTCTTCCCCGTGAGGGTCTTCA 36086 Query 46581 CAAAGATTTGCATTTTG 46597 | ||||| ||||| ||| Sbjct 36087 CGAAGATCTGCATGTTG 36103 >seq155 Length=1009872 Score = 116 bits (128), Expect = 4e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||||| || || || | || ||||||||||| |||||||| Sbjct 940217 CTCCTTCTGAATGTTGTAGTCGGCGAGGGTCCGGCCATCCTCGAGCTGCTTTCCGGCGAA 940276 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | || |||||||||| |||||| ||||| | Sbjct 940277 GATGAGGCGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 940336 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || ||||| || | ||||| || || ||||| || || || || Sbjct 940337 CTCGATTGTGTCGGAAGACTCCACCTCAAGGGTGATTGTCTTCCCCGTGAGGGTCTTCAC 940396 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 940397 GAAGATCTGCAT 940408 >seq328 Length=735707 Score = 114 bits (126), Expect = 1e-20 Identities = 146/197 (74%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||||| || ||||| | || || |||||||| |||||||| Sbjct 4870 CTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCATCCTCTAGCTGCTTTCCGGCGAA 4929 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||| || | || | || ||||||||| |||||| ||||| ||| Sbjct 4930 GATAAGGCGCTGCTGATCCGGTGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 4988 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | ||||| || ||||| || || || || | Sbjct 4989 TGTCGATCGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCGGTGAGGGTCTTGA 5048 Query 46581 CAAAGATTTGCATTTTG 46597 | ||||| ||||| ||| Sbjct 5049 C-AAGATCTGCATCTTG 5064 >seq26 Length=2273700 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/218 (70%), Gaps = 8/218 (4%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||| | || |||||||||||| |||||||| | || || ||| | Sbjct 453448 CGCAGGACAAGATGAAGAGTGGACTCCTTTTGGATGTTGTAGTCCGCCAGGGTACGCCCA 453389 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| ||||| || || | | |||||| || | || | | |||||| Sbjct 453388 TCCTCAAGCTGCTTCCCGGC-AAAATAAGCCTCTGCTGATCAGGGGGGATCCCTTCCTTG 453330 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTG 46555 ||| |||||| ||||| | | | ||||| |||| ||||| |||| ||| Sbjct 453329 TCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTC---TCCACTTCCAGAGTG 453273 Query 46556 ATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || ||||| || || ||||| || ||||| Sbjct 453272 ATGGTCTTCCCAGTCAGGGTCTTCACAAA-ATCTGCAT 453236 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || || || |||||||| | || ||||| | || || ||||| ||||||||||| Sbjct 441565 CTCTTTCTGAATGTTGTAGTCAGCCAGTGTGCGACCATCCTCAAGCTGTTTGCCGGCGAA 441506 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||| ||||| | || | || ||||||||| |||||| ||| | | Sbjct 441505 AATAAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATT 441446 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || ||| ||| || || | |||||||| ||||| ||||| || || Sbjct 441445 ATCGATTGTATCAGAGCT---TTCAACTTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTT 441389 Query 46579 AACAAAGATTTGCAT 46593 ||||||||| ||||| Sbjct 441388 AACAAAGATCTGCAT 441374 >seq297 Length=752846 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || || || |||||||| | |||||||| | || || |||||||| ||||| || Sbjct 218349 TCTTTCTGAATGTTGTAGTCTGCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAG 218290 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||| || | || | || |||||||||| ||||| |||| | | Sbjct 218289 ATGAGGCGCTGCTGATCAGGGGGTATGCCCTCCTTGTCCTGAATCTTTGTCTTCACATTA 218230 Query 46523 GCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| ||| ||||| |||| || || || || || || | || ||| Sbjct 218229 TCAATGGTGTCAGAACTC---TCCACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTA 218173 Query 46580 ACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 218172 ACAAAGATCTGCAT 218159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565049356017120