Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq297 109 4e-19 seq4 86.0 4e-12 >seq297 Length=752846 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39489 ATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATC 39548 ||| || || || | |||||| || | || | ||| |||||| || || || || || Sbjct 218389 ATCACCACCACGGAGACGCAGGACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTC 218330 Query 39549 GGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 || | | ||| |||| |||| || |||||| |||| || | ||||||||||| | Sbjct 218329 TGCAAGAGTGCGACCATCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCAGG 218270 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGT-TTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||||| ||| || ||||| | | | ||||| || | | | | ||||| | || | Sbjct 218269 GGGTATGCCCTCCTTGTC-CTGAATCTTTGTCTTCACATTATCAATGGTGTCAGAACTCT 218211 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||||| |||||||| || || |||||||| || || ||||||||||| Sbjct 218210 CCACCTCCAAGGTAATTGTCTTCCCTGTTAAAGTCTTAACAAAGATCTGCAT 218159 >seq4 Length=3455462 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | || || ||||| || | ||| || ||||| || |||||||| || Sbjct 2201043 GCCACCACGGAGGCGGAGCACCAAGTGAAGAGTAGACTCCTTTTGGATGTTATAATCCGC 2201102 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || ||| |||| |||| ||| || || |||| || ||||||||||| |||| || Sbjct 2201103 CAGGGTGCGGCCATCCTCCAGTTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCCGGAGG 2201162 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| | | |||| | | ||| | | | ||||| | ||| || | Sbjct 2201163 AATGCCTTCCTTGTC-CTGAATTTTAGCCTTCACGTTGTCAATCGTGTCCGAGCTCTCGA 2201221 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || || || | || || || ||||||||||| Sbjct 2201222 CCTCAAGAGTGATGGTCTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 2201270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347256326681348