Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq859 158 1e-33 seq29 149 8e-31 seq195 131 2e-25 seq199 127 3e-24 seq52 111 2e-19 >seq859 Length=348630 Score = 158 bits (174), Expect = 1e-33 Identities = 125/150 (83%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||| ||| | |||||||| |||||||| |||||||||||||| ||| Sbjct 128277 TCTTTCGCCGAGCGCCTCGTTGCATTTGCCGCCGTTGAGGGGATCTTCTTCTCTGGCTCC 128336 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||| |||| | |||||||||||||| ||||||||||| || ||| |||||||||| Sbjct 128337 TTCTGCTCTATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCGGGGCTCACCTTCTCCAAC 128396 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || |||||||| |||||| Sbjct 128397 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 128426 >seq29 Length=2149955 Score = 149 bits (164), Expect = 8e-31 Identities = 335/492 (68%), Gaps = 15/492 (3%) Strand=Plus/Plus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 |||||||| || || | || | ||| ||| || || || | || || || || || Sbjct 523366 TCAAAGCGTCCGGGCCTTAGCAAAGCGGAATCTAGAATGTCTGCACGGTTTGTGGCTGCA 523425 Query 15948 ATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAA 16005 || || | |||||| || ||| || |||||||||||||||||||||||||||| |||| Sbjct 523426 ATTACTATAATACCAGTATTTCCTT--CAAAACCATCCATCTCTGTCAAAAGCTGATTAA 523483 Query 16006 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 16065 ||||||||| | |||||||||| || | ||| | | | |||| |||| || | Sbjct 523484 GAGTTTGTTCTCTTTCATCATTC-CTCCTCCAATACCTGTTCCTCTTTGCCTTCCAACAG 523542 Query 16066 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GCGAGCGACTTCAAAGAGA 16124 ||||||| ||||||| || || |||||||| ||| || | | ||| ||| ||| Sbjct 523543 CATCAATTTCATCAACAAACACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAAA-AGA 523601 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 || || || || || || || |||||||||||||| ||||| | | | ||| || Sbjct 523602 TCACGAACTCGTGAAGCACCAACTCCAACAAACATCTCTACAAACTCCGACCCTGAA-AT 523660 Query 16185 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 || || || || ||| | ||| || ||||| || || || | |||||| || || Sbjct 523661 TGAGAAAAATGGAACACCTGCTTCTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGT 523720 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACTTCCAAAGT--A 16300 || || ||| | || || ||||| ||||| || || ||| | ||| | Sbjct 523721 TCCCGGAGGACCAACAAGAAGAACACCTTTAGGAATACGAGCACCTACTGC---AGTAAA 523777 Query 16301 TCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAAT 16360 ||| ||||||| ||| | ||| ||||| | ||| || || | |||||| | || | Sbjct 523778 TCTTTCAGGTTTCTTCAAAAACTCCACCACCTCCATAAAATCCTGTTTGGCTTCATCTAC 523837 Query 16361 CCCCTCAACATC 16372 || ||||||| Sbjct 523838 TCCAGCAACATC 523849 >seq195 Length=1014778 Score = 131 bits (144), Expect = 2e-25 Identities = 119/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| | || || | ||||||||| ||||||||||| || ||| Sbjct 873488 TCCTTCGCGGAGCGCCTCGTGGCCTTCTCTGCTGTTGAGGGGATCTTCTTCTCCGGCTCC 873547 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 ||||| | || | |||||||||||||| || |||||||| || || |||||||||| Sbjct 873548 TTCTGTTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTGACCTTCTCCAAC 873607 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || |||||||| |||||| Sbjct 873608 GAGCTCATCTCCCGCGACGAGGGCCTCCAC 873637 >seq199 Length=986226 Score = 127 bits (140), Expect = 3e-24 Identities = 238/340 (70%), Gaps = 15/340 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT--TTCGTTATCA 15974 ||| |||||||| | ||||| || || || || |||| || || || ||| || || Sbjct 367558 ATCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTT--CA 367615 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| ||||| ||||| |||| ||||||||| | ||||||||| | | Sbjct 367616 AACCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--AC 367673 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | || | | | |||| |||| || |||||||||||||| | || | ||||| Sbjct 367674 CTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCA-CAAAATGATGC 367732 Query 16093 ATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | || ||| || || |||| ||| ||||| || || || || || ||||| Sbjct 367733 AAGGCGCATTCTCTTTGGC--CTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACC 367790 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | | | | ||| |||| || || || ||| | ||||| Sbjct 367791 AACAAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCAC 367849 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | ||||| || ||| || | || || || || ||||| Sbjct 367850 CAGCAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGG 367889 >seq52 Length=1645480 Score = 111 bits (122), Expect = 2e-19 Identities = 219/318 (69%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 ||||||||||| || ||||| ||||| |||||||| || |||| ||||||||| | | Sbjct 1429826 AAACCATCCATTTCCGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--AC 1429769 Query 16035 ATAC--CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | ||| || | || ||| | ||||| ||||||||||| || |||||||| |||| Sbjct 1429768 CTCCGAGACCGGCCCCCCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 1429709 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 16150 | | | ||||| | || || || | |||||| ||||| || || || || Sbjct 1429708 AGG---GGCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACACGAGAAGCTCCAACTCC 1429652 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 ||| || | |||||| || | | ||||| || || ||| || || | || || Sbjct 1429651 AACGAAGAGCTCCACGAATTCGGAGGCGGCGCACGAGAAGAAAGGCAC-CCGGCCTCGCC 1429593 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || | ||| ||||| || |||||||| || || || || ||| | | |||| || Sbjct 1429592 GGCGACGGCCCGGGCCAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGAGGCAGCC 1429533 Query 16271 TCGTGGAATCTTGGCGCC 16288 | | || ||||||||||| Sbjct 1429532 TTG-GGGATCTTGGCGCC 1429516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620534792704320