Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq94 95.1 1e-14 seq52 95.1 1e-14 seq28 86.0 7e-12 seq859 82.4 9e-11 >seq94 Length=1461416 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 |||||| |||| |||||||| || ||||||||||||||||| || || || |||||| Sbjct 1166824 GTAGATATTAGATGTGTAGGGCTCAAAACACTCATTGTTGCCAAGAATCTGACTAGTGGA 1166765 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTC 109846 ||| |||||||||||||| || ||||| ||||| Sbjct 1166764 AGCAGTGGGCATGGGAGCTATAAGAAGGGAGTTTC 1166730 >seq52 Length=1645480 Score = 95.1 bits (104), Expect = 1e-14 Identities = 275/410 (67%), Gaps = 15/410 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || || || || | |||| |||| || | ||| | ||| || || Sbjct 1429916 CGGTCGAATCGGCCAGGCCGCAGCAAAGCAGCATCGAGCACATCCGGCCTGTTGGTCGCT 1429857 Query 11563 GCAATGACTACAATG-CCAGTCTCATTGTC---GAAACCGTCCATTTCTGTGAGAAGCTG 11618 |||| || |||||| || || ||| | |||||| |||||||| || | ||||| Sbjct 1429856 GCAA-GA--ACAATGACCCCACT-ATTCCCCGAGAAACCATCCATTTCCGTCAAGAGCTG 1429801 Query 11619 GTTGATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGCCGAACGCTTCTTAC 11677 || || ||||| || | |||||| || | | | ||| ||| |||| | | | Sbjct 1429800 ATTAATAGTCTGCTCCCTCTCATCATTCCCACCTCCGAG-ACCGGCCCCCCGCTGCCTCC 1429742 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG-CCTGTTCG 11736 | || || |||||||| |||||||| || || || || | || || || ||| ||| Sbjct 1429741 CCACCGCATCAATCTCGTCGATGAAGACAATGCAGGG--GCTTTCGACTTGGCCTTCTCG 1429684 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || | || || ||||| |||||||| || ||||| | ||| ||||| | | ||| Sbjct 1429683 AACAAATCCCGGACACGAGAAGCTCCAACTCCAACGAAGAGCTCCACGAATTCGGAGGCG 1429624 Query 11797 GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | ||| | ||| || || | ||| || |||| ||| || || ||||||||||| Sbjct 1429623 GCGCACGAGAAGAAAGGCACCCG-GCCTCGCCGGCGACGGCCCGGGCCAGGAGAGTCTTT 1429565 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || || || || | ||| | | ||| ||| |||||||||||| || Sbjct 1429564 CCGGTGCCGGGAGGACCGACCAAGAGGCAGCC-TTGGGGATCTTGGCGCC 1429516 >seq28 Length=2151574 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 109752 GTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGA 109811 |||||| || | ||||||||| || ||||||||||||||||| || || || |||||| Sbjct 708518 GTAGATATTCGACGTGTAGGGCTCAAAACACTCATTGTTGCCGAGAATCTGACTAGTGGA 708459 Query 109812 AGCTGTGGGCATGGGAGCCATGAGAAG 109838 ||| || ||||| ||||| || ||||| Sbjct 708458 AGCAGTTGGCATTGGAGCTATAAGAAG 708432 >seq859 Length=348630 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 128425 TGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACCA 128366 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || ||||| |||||||| ||||| || | Sbjct 128365 CGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGCG 128306 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 || || || | || ||||| || |||| ||| || |||| |||| ||| ||||| Sbjct 128305 GCAAATGCAACGAGGCGCTCGGCGAAAGACTCG-GAGGACTCGATCCACCGGAGGGCCCA 128247 Query 119687 GTTGGCCTT 119695 | |||||| Sbjct 128246 TTGGGCCTT 128238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588779016976800