Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq29 149 7e-31 seq859 122 1e-22 seq199 122 1e-22 seq195 105 8e-18 seq52 98.7 1e-15 seq3 95.1 1e-14 seq94 82.4 9e-11 >seq29 Length=2149955 Score = 149 bits (164), Expect = 7e-31 Identities = 333/491 (68%), Gaps = 13/491 (3%) Strand=Plus/Plus Query 9195 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9254 |||||||| || || | || | ||| ||| || || || | || || || || || Sbjct 523366 TCAAAGCGTCCGGGCCTTAGCAAAGCGGAATCTAGAATGTCTGCACGGTTTGTGGCTGCA 523425 Query 9255 ATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9312 || || | |||||| || ||| || ||||||||||||||||||||||||| || |||| Sbjct 523426 ATTACTATAATACCAGTATTTCCTT--CAAAACCATCCATCTCTGTCAAAAGCTGATTAA 523483 Query 9313 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9372 ||||||||| | |||||||||| || | ||| | | | |||| |||| || | Sbjct 523484 GAGTTTGTTCTCTTTCATCATTC-CTCCTCCAATACCTGTTCCTCTTTGCCTTCCAACAG 523542 Query 9373 CATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGAT 9432 ||||||| ||||||| || ||||| ||||| ||| || ||| | | || |||| Sbjct 523543 CATCAATTTCATCAACAAACACAATGCATGGAGCATTCTCTTTGGCCTTCTTGAAAAGAT 523602 Query 9433 CGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATT 9492 | ||||| | | || || || |||||||||||||| ||||| | | | ||| ||| Sbjct 523603 CACGAACTCGTGAAGCACCAACTCCAACAAACATCTCTACAAACTCCGACCCTGAA-ATT 523661 Query 9493 G-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTA 9551 | || || || ||| | ||| || ||||| || || || | |||||| || || Sbjct 523662 GAGAAAAATGGAACACCTGCTTCTCCTGCAATTGCCTTAGCAAGCAAAGTCTTCCCAGTT 523721 Query 9552 CCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC-ACTTCCAAAGT--AT 9608 || || ||| | || || |||| ||||| || || ||| | ||| || Sbjct 523722 CCCGGAGGACCAACAAGAAGAACACCTTTAGGAATACGAGCACCTACTGC---AGTAAAT 523778 Query 9609 CTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATC 9668 || ||||||| ||| | ||| ||||| | ||| || || | |||||| | || | Sbjct 523779 CTTTCAGGTTTCTTCAAAAACTCCACCACCTCCATAAAATCCTGTTTGGCTTCATCTACT 523838 Query 9669 CCCTCAACATC 9679 || ||||||| Sbjct 523839 CCAGCAACATC 523849 >seq859 Length=348630 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || ||||||||||| Sbjct 128426 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGACC 128367 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | |||| |||||| || || ||||||||||| ||||| || Sbjct 128366 ACGCTTCTTGAGCCAGAAGATAGAGCAGAAGGAGCCAGAGAAGAAGATCCCCTCAACGGC 128307 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 ||||| |||| |||||||||||||| || Sbjct 128306 GGCAAATGCAACGAGGCGCTCGGCGAAAGA 128277 >seq199 Length=986226 Score = 122 bits (134), Expect = 1e-22 Identities = 285/419 (68%), Gaps = 17/419 (4%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCA 9281 ||| |||||||| | ||||| || || || || |||| || || || ||| || || Sbjct 367558 ATCTAGGATATCTGCACGATTGGTGGCTGCAATTACAATTATTCCAGTATTTCCTT--CA 367615 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || ||||||||||| ||||| || || |||| ||||||||| | ||||||||| | | Sbjct 367616 AACCCATCCATCTCAGTCAACAGCTGATTAAGAGTTTGTTCTCTCTCATCATTCCC--AC 367673 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || | | | |||| |||| || |||||||||||||| | || | || | Sbjct 367674 CTCCAATTCCTGTTCCTCTTTGCCTTCCAACAGCATCAATCTCATCCA-CAAAATGATGC 367732 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || ||| || ||| | | ||| ||||| || || | | || || ||||||| Sbjct 367733 AAGGCGCATTCTCTTTGGCCTTCTTAAAAAGATCACGGACTCGTGAAGCACCTACACCAA 367792 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| ||||| | | | | ||| |||| || || || ||| | |||||| Sbjct 367793 CAAACATCTCTACAAACTCAGAGCCAGAA-ATTGAGAAAAATGGAACACCTGCTTCACCA 367851 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 ||||| || ||| || | || || || || ||||| ||| || || ||||| Sbjct 367852 GCAATTGCCTTGGCAAGCAATGTTTTCCCAGTTCCTGGAGGACCAATAAGAAGAACACCC 367911 Query 9579 CGTGGAATCTTGGCGCC-ACTTCCAAAGT--ATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 ||||||| || || ||| | ||| | ||||| |||| ||| | || ||||| Sbjct 367912 TTTGGAATCCGTGCACCTACTGC---AGTAAACCTCTCTGGTTTCTTCAAGAACTCCAC 367967 >seq195 Length=1014778 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 873637 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGGCC 873578 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | ||||| || |||||||||||||| ||||| ||| Sbjct 873577 GCGCTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCGGAGAAGAAGATCCCCTCAACAGC 873518 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAG 117435 | || || | |||||||| ||||||||| Sbjct 873517 AGAGAAGGCCACGAGGCGCTCCGCGAAGGAG 873487 >seq52 Length=1645480 Score = 98.7 bits (108), Expect = 1e-15 Identities = 216/317 (68%), Gaps = 9/317 (3%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| || ||||| || || |||||||| || |||| ||||||||| | | Sbjct 1429826 AAACCATCCATTTCCGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTCCC--AC 1429769 Query 9342 ATAC--CACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | ||| || | || ||| | ||||| ||||||||||| || ||||||||||| | Sbjct 1429768 CTCCGAGACCGGCCCCCCGCTGCCTCCCCACCGCATCAATCTCGTCGATGAAGACAATGC 1429709 Query 9400 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 | || | ||| | ||| | || || | ||| || || | || || || ||| Sbjct 1429708 AGGG--GCTTTCGACTTGGCCTTCTCGAACAAATCCCGGACACGAGAAGCTCCAACTCCA 1429651 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 || || | |||||| || | | ||||| || || ||| || || | || || Sbjct 1429650 ACGAAGAGCTCCACGAATTCGGAGGCGGCGCACGAGAAGAAAGGCAC-CCGGCCTCGCCG 1429592 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 || | ||| ||||| || |||||||| || || || || ||| | | || |||| || Sbjct 1429591 GCGACGGCCCGGGCCAGGAGAGTCTTTCCGGTGCCGGGAGGACCGACCAAGA-GGCAGCC 1429533 Query 9579 CGTGGAATCTTGGCGCC 9595 || ||||||||||| Sbjct 1429532 TTGGGGATCTTGGCGCC 1429516 >seq3 Length=3667290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || || |||||||| || || |||| || || | || | || Sbjct 2996237 ATCAAGAATTTCTGGTCGGTTCGTCGCAGCAATTACAATAACTCCACTATCCCCACTGAA 2996178 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| || || | |||||||| | |||||||| | ||||||||| || | | Sbjct 2996177 ACCATCCATTTCAGTAAGCAGTTGGTTCAATGTTTGTTCTCTTTCATCATTTCCT--CCT 2996120 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | || | | | |||| |||| || ||||||||||| ||||||||||| | |||| Sbjct 2996119 CCAATTCCTGTTCCTCTTTGCCTTCCTACTGCATCAATCTCGTCAATGAAGACCAGACAT 2996060 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || |||| | || | | ||| | ||| | ||| || || || ||||| ||| Sbjct 2996059 GGAGAATTTGCTTTTGCCTTATTAAACAAATCCCTAACTCTCGAAGCCCCTACACCGACA 2996000 Query 9462 AACATCTC 9469 |||||||| Sbjct 2995999 AACATCTC 2995992 >seq94 Length=1461416 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || || |||||||||||||| ||||| || ||| | |||| |||||| || || Sbjct 1165274 GCAATCGATGCCAAATTGCACACAGCAGTTTCAGTAGGACTTGTGAACTCTATTATCTCA 1165215 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 ||||| ||||| ||| ||| || ||||||| ||| | ||| ||||| ||| | ||||| Sbjct 1165214 GTACATAAGTTTGAAGACTTGATAGTCCCCAGATTTTGTTGATTACT-TTTCTATTGCAA 1165156 Query 106583 GCATCCT 106589 | ||||| Sbjct 1165155 GTATCCT 1165149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589783480921440