Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2728 203 4e-47 seq916 129 7e-25 seq85 89.7 6e-13 seq2163 87.8 2e-12 seq291 87.8 2e-12 >seq2728 Length=129770 Score = 203 bits (224), Expect = 4e-47 Identities = 238/319 (75%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 182015 GCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACT 182074 || ||||| |||| ||||| || |||||| | | |||| |||||| |||||||| Sbjct 96499 GCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTGCAAATACA 96558 Query 182075 TTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGC 182134 ||| || || | ||||||||| ||||| || ||||||||||| || || |||||| Sbjct 96559 TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAACCGC 96618 Query 182135 TTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATG 182194 || ||||| || ||||| || |||| ||| |||||| | ||||| |||||||||||| Sbjct 96619 TTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATG 96678 Query 182195 CTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTC-CATCGGTATTATTGGTCTTGCTCT 182253 || ||||| || || | | | | |||| ||| | | |||| | | || || ||||| Sbjct 96679 CTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGG-GTAGTCGGCCTGGCTCT 96737 Query 182254 CAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTT 182313 ||||| |||||||||||||| || ||||||||||| | ||| | ||||| || || || Sbjct 96738 GAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATCCTGAATT 96797 Query 182314 CGAGACGTTCTACACAAAG 182332 ||||| ||||| ||||| Sbjct 96798 TGAGACTTTCTAATCAAAG 96816 >seq916 Length=298367 Score = 129 bits (142), Expect = 7e-25 Identities = 196/278 (71%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 181712 TGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTT 181771 ||||||||||| || |||||||| | ||| || | ||||||| | | |||| Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 181772 GAACTTGCTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATT 181831 |||| |||| | | | | | ||| || ||||| || || || | | ||| ||| Sbjct 270256 GAACCTGCTTGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAATT 270315 Query 181832 GCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCG 181891 ||| | || || |||||||| |||| ||||| ||||| ||||| |||||||||||||| Sbjct 270316 GCTATTTT-GTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCA 270374 Query 181892 CCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAAT 181951 || | ||||| || || || || | ||| | |||||| |||| || ||||||||| Sbjct 270375 CCCA-----GGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAAT 270429 Query 181952 TGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGG 181989 |||| | | || || || ||| ||| || ||||| || Sbjct 270430 TGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGG 270467 >seq85 Length=1476802 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 180255 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTC 180314 |||||| || ||||||||||| ||||| || || |||||| |||| ||||| ||||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 180315 TTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTT 180363 |||||||| || || ||| || ||||| ||||| |||| |||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTATT 645653 >seq2163 Length=162151 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 ||||| ||| | | | ||||| || | ||||| ||||||||||| ||| | || ||| Sbjct 135435 GATGATTGGTTATGAAGGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTT 135376 Query 181496 CCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGG 181555 || ||||||| | || | || || ||| | | || | |||||||| || || ||| Sbjct 135375 CCTTATGCTTATTTCGCTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGG 135316 Query 181556 TACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTG 181615 || ||||| |||||||| |||||| | || ||| |||||| | || || | || Sbjct 135315 TATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGTAGTT 135256 Query 181616 TCAACGCCTGC 181626 || || ||||| Sbjct 135255 TCCACTCCTGC 135245 >seq291 Length=752601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 181872 AATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCT 181931 |||| |||||||||||||||| | ||| || || || || || || ||| | |||| Sbjct 473238 AATCTGGTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCT 473179 Query 181932 TCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGG 181989 || |||| || ||||||||||||| | | || || || ||||||||||| ||| ||| Sbjct 473178 TCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGG 473121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610192652790240