Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2728 105 8e-18 seq2163 82.4 9e-11 >seq2728 Length=129770 Score = 105 bits (116), Expect = 8e-18 Identities = 178/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 171198 ACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAAC 171257 ||||||||||| ||| | || || || | ||||| ||||| ||| | || || ||| Sbjct 96556 ACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAAC 96615 Query 171258 AGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTT 171317 | || ||||| || || ||||| ||||||| || || ||| | | ||||| ||| || Sbjct 96616 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTT 96675 Query 171318 ATGTTGTTCGTTCCTGTCATGGGTATGTGGA--CATCATCTATAGGTATCGTAGGTCTAG 171375 ||| | || || || || | | | | |||| | ||| |||| || || || | Sbjct 96676 ATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTA--GTCGGCCTGG 96733 Query 171376 CACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAG 171435 | || |||||| | || || || || || || ||||| || | ||||| ||||| || | Sbjct 96734 CTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATCCTG 96793 Query 171436 AGTTCGAGACTTTCTA 171451 | || ||||||||||| Sbjct 96794 AATTTGAGACTTTCTA 96809 >seq2163 Length=162151 Score = 82.4 bits (90), Expect = 9e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 170541 GACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGTCTTTTACTTCTG 170600 || || |||||| || || ||||| | || |||| |||||||| || ||||| | Sbjct 135435 GATGATTGGTTATGAAGGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTT 135376 Query 170601 CCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTCGTTACATCATGG 170660 |||| ||| || | | | || |||||||| |||| | || || || || |||||| Sbjct 135375 CCTTATGCTTATTTCGCTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGG 135316 Query 170661 TATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTAACAGCAGCAGTT 170720 ||||| ||||| | || || ||| | || || || || ||| | || || | |||| Sbjct 135315 TATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGTAGTT 135256 Query 170721 TCCACACCTG 170730 ||||| |||| Sbjct 135255 TCCACTCCTG 135246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579019082279040