Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq2728 179 4e-40 seq518 100 3e-16 seq27 86.0 7e-12 seq4860 84.2 3e-11 seq916 82.4 9e-11 >seq2728 Length=129770 Score = 179 bits (198), Expect = 4e-40 Identities = 239/332 (72%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 169877 TTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACACATTGTATGAA 169936 || |||| || |||| | ||||| ||||||| ||| ||||| || || || | ||| Sbjct 96478 TTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAA 96537 Query 169937 GACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTAT 169996 || ||||| |||||||| ||| || ||| | | || || | |||||||||||| Sbjct 96538 GATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTAT 96597 Query 169997 TCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAG 170056 || ||||||||||| |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 96598 TCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 96657 Query 170057 CGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATT 170116 ||||| | ||||| || ||| | ||||| || || | | | | |||| || || Sbjct 96658 TGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTT 96717 Query 170117 GGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGA 170176 | | | ||||| ||||| || || |||||||| || ||||| || || || | Sbjct 96718 CGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGT 96777 Query 170177 GCAGCAGAAGATCCAGAATTTGAGACCTTCTA 170208 ||||| |||||||| ||||||||||| ||||| Sbjct 96778 GCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 100 bits (110), Expect = 3e-16 Identities = 301/460 (65%), Gaps = 6/460 (1%) Strand=Plus/Minus Query 168383 ACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTT 168442 |||| || ||| ||||||| | || ||| | || | || || |||| | | | | Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 168443 TGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAA 168502 | || |||||||| || || |||| || | | || | | | || || ||| ||| Sbjct 409564 TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAA 409505 Query 168503 CCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAG 168562 || || || | ||||| | ||| | |||| || ||||| | || || |||| Sbjct 409504 ATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAG 409445 Query 168563 CCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCT 168622 || |||||||| || | |||| |||| ||||| ||| |||||||| || | | Sbjct 409444 GTGCCCATGGTTATTTGGCAGATTTG-TCTTACAATATGCTAGTTTCAACAATTCTTGTT 409386 Query 168623 CCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGC 168681 |||| || || || | ||||| |||| || || || |||| ||| || || || | Sbjct 409385 CCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGC--TTTAC 409328 Query 168682 GTCTCC--ACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATG 168739 || || || ||| | |||||||| || |||||||| | |||||| | | | || Sbjct 409327 GTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACA 409268 Query 168740 GTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGG 168799 ||||||| ||| | | || || | | ||| | | || | | | | | ||||| Sbjct 409267 ATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGG 409208 Query 168800 AAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 168839 |||| ||| |||| |||| || ||||||||||| || || Sbjct 409207 AAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGA 409168 >seq27 Length=2012675 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 ||||||| ||||| ||||| |||||||| || || |||||||| ||||||| ||| || Sbjct 1262127 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATG-TTATTTT 1262185 Query 168580 GGTCGTTTGATCTTCCAATACGCT 168603 || || |||||||||||||| ||| Sbjct 1262186 GGCCGATTGATCTTCCAATATGCT 1262209 >seq4860 Length=43173 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 170125 TGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGA 170184 |||||| ||||| || || | |||||| || ||| | || || ||| | ||||| | Sbjct 9556 TGGCCTGGCTCTGAACCTCCATGCTTATGACTTCATTTTCCAAGAAATCCGTGCAGCGAA 9497 Query 170185 AGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCT 170223 |||||| ||||||||||| |||||||||||||| ||||| Sbjct 9496 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCT 9458 >seq916 Length=298367 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 169684 TTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTA 169743 ||||||||| || ||||||| || ||| |||||| | ||||| ||| || | || || Sbjct 270285 TTATAATGCAATCGCATTCTTTGTTCCAATTGCTAT-TTTGTTTCTGTATTCTTCATTTA 270343 Query 169744 CCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAG 169803 ||||| || || || ||||||||||| ||| || || |||| || || | Sbjct 270344 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACCC-----AGGTGTTGCAGCTATATTTTG 270398 Query 169804 GTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGG 169863 ||| | | ||| | ||||| || || || |||| |||||| ||||| || ||| || Sbjct 270399 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGG 270458 Query 169864 TGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTA 169913 || || ||| | || || || |||| | |||| ||||||| || Sbjct 270459 AGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 270508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574281467304480