Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq2728 214 2e-50 seq916 98.7 1e-15 seq85 84.2 2e-11 >seq2728 Length=129770 Score = 214 bits (236), Expect = 2e-50 Identities = 241/320 (75%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 165777 TGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATG 165836 |||| | || || ||||||| ||| ||||| |||||| | | |||||||||||| || Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTG 96550 Query 165837 CAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTG 165896 ||||||| ||| || ||| || | ||||||| ||||| || || |||||||| |||| Sbjct 96551 CAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTG 96610 Query 165897 CAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATT 165956 | ||||| || ||||| || ||||| || |||| ||| ||||| | ||||| |||| Sbjct 96611 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 96670 Query 165957 TCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTC-CATCGGTATTATTGGT 166015 |||||||||| ||||| || || | | | | |||| ||| | | |||| | | || Sbjct 96671 TCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGG-GTAGTCGGC 96729 Query 166016 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGAC 166075 || ||||| ||||| |||||||||||||| || |||||||| || | ||||| ||||| Sbjct 96730 CTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGAT 96789 Query 166076 CCAGAGTTTGAAACCTTCTA 166095 || || ||||| || ||||| Sbjct 96790 CCTGAATTTGAGACTTTCTA 96809 >seq916 Length=298367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 165572 TACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTAC 165631 || ||||| || || |||| || ||| || ||| |||| ||| || || |||| || Sbjct 270286 TATAATGCAATCGCATTCTTTGTTCCAATTGCTATTTT-GTTTCTGTATTCTTCATTTAT 270344 Query 165632 CCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGG 165691 || ||||||||||| |||||||| || || || || || ||||| || || | Sbjct 270345 CCACTGGGTCAATCTAGTTGGTTCTTTGCACC-----CAGGTGTTGCAGCTATATTTTGA 270399 Query 165692 TTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGT 165751 ||| | |||||| | ||||| || ||||| |||| ||||| || |||||| ||| || Sbjct 270400 TTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGGA 270459 Query 165752 GTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTA 165800 ||||| || | | ||| ||| |||| | | || ||||||| || Sbjct 270460 GTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTGCTA 270508 >seq85 Length=1476802 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 164292 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 164351 |||||| || ||||||||||| ||||| || || || ||| | || || ||||| ||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 164352 TTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTAC 164395 || ||||| || || |||||||| ||||| ||||| |||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556738536500640