Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2728 91.5 2e-13 seq2163 86.0 7e-12 >seq2728 Length=129770 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 173620 ACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAAC 173679 || ||| | || ||| | || || || | ||||| |||||| ||| | || || ||| Sbjct 96556 ACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTGCTAAC 96615 Query 173680 AGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTC 173739 | || ||||| || || ||||| | || ||||| || ||| | | ||||| ||| | Sbjct 96616 CGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTT 96675 Query 173740 ATGTTGTTCGTACCTGTCATGGGTATGTGGACA--TCATCCATAGGTATCGTAGGTCTTG 173797 ||| | || ||||| || | | | | |||| | || |||| || || || | Sbjct 96676 ATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGGGTA--GTCGGCCTGG 96733 Query 173798 CACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAG 173857 | || ||||| | || || ||||| || || ||||| || | ||||| |||||||| | Sbjct 96734 CTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGATCCTG 96793 Query 173858 AGTTCGAGACTTTCTA 173873 | || ||||||||||| Sbjct 96794 AATTTGAGACTTTCTA 96809 >seq2163 Length=162151 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 172963 GACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTCTA 173022 || || |||||| || || |||||| | || | || |||||||| || ||||| | Sbjct 135435 GATGATTGGTTATGAAGGGACCGTTTCATTTTTGTAGGCTGGTCTGGCCTATTACTCTTT 135376 Query 173023 CCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTCGTTACATCATGG 173082 |||| |||||| | || | || |||||||| |||| | || || || || |||||| Sbjct 135375 CCTTATGCTTATTTCGCTTTAGGAGGTTGGTTTATAGGTATAACTTTTGTAACTTCATGG 135316 Query 173083 TATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTAACAGCAGCAGTC 173142 ||||| ||||| | || ||| ||| | ||||| || || || || || | ||| Sbjct 135315 TATACCCATGGATTGGCCAGTTCCTATTTGGAAGGTTGCAATTTCTTGACCGCTGTAGTT 135256 Query 173143 TCCACACCTG 173152 ||||| |||| Sbjct 135255 TCCACTCCTG 135246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587854526276160