Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq2728 183 3e-41 seq518 147 2e-30 seq916 122 1e-22 seq85 102 9e-17 seq291 98.7 1e-15 seq172 84.2 2e-11 >seq2728 Length=129770 Score = 183 bits (202), Expect = 3e-41 Identities = 241/334 (72%), Gaps = 0/334 (0%) Strand=Plus/Plus Query 164189 TACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATG 164248 || |||||| || |||||| |||||||| || | || || |||||||| || | | Sbjct 96476 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 96535 Query 164249 AAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTT 164308 ||||||| || ||||| || || || ||| | | || || | |||||||||| Sbjct 96536 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 96595 Query 164309 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACA 164368 |||| ||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || | Sbjct 96596 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 96655 Query 164369 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 164428 | | ||| | ||||| || ||| | ||||| || || | | | |||||| || Sbjct 96656 AATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTC 96715 Query 164429 TTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTA 164488 || | | | ||||| ||||| || || |||||||| || || || ||||| ||| Sbjct 96716 TTCGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTC 96775 Query 164489 GAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTA 164522 | ||||| ||||||||||| || ||||||||||| Sbjct 96776 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTA 96809 >seq518 Length=568097 Score = 147 bits (162), Expect = 2e-30 Identities = 320/469 (68%), Gaps = 10/469 (2%) Strand=Plus/Minus Query 162905 ACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCT-TCGGTGGTTCA 162963 ||||||| || ||||||| | ||||||||||||| || ||||| | | | ||| Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 162964 CTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAA 163023 | |||||||| || || ||||| |||| || | | | | || || || ||| || Sbjct 409564 -TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 163024 ACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTC 163083 | |||||| || | ||||| | ||| |||||| || || || | || || || Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 163084 GCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGT 163143 | ||||||||||| || | |||| |||| |||||||| |||||||| || || Sbjct 409445 GGTGCCCATGGTTATTTGGCAGATTTG-TCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 163144 TCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGG 163202 ||||| || || || | ||||| |||| || || || |||| ||| || || || Sbjct 409386 TCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGC--TTTA 409329 Query 163203 CGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 163260 ||| ||| || ||| | |||||||| || |||||||| | |||||| | | | || Sbjct 409328 CGTATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGAC 409269 Query 163261 GGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGC-AGGTTTGGGTAT 163319 ||||||| ||| | | || || | | || | | || | || | ||||| ||| Sbjct 409268 AATCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGA-TAT 409210 Query 163320 GGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACCTGGCA 163368 |||||| ||| | || | ||||||||||||||||| || ||| | ||| Sbjct 409209 GGAAGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGACATAGCA 409161 >seq916 Length=298367 Score = 122 bits (134), Expect = 1e-22 Identities = 216/313 (69%), Gaps = 14/313 (4%) Strand=Plus/Plus Query 163914 TTTTGTGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACT 163973 |||||| || |||||||| | || || | ||||| | | || |||| |||| Sbjct 270201 TTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTCGAACC 270260 Query 163974 TGCTCGCCTGATTGG----AATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTG 164029 |||| ||||| | | | ||| || ||||| || || |||| || ||| |||| Sbjct 270261 TGCT----TGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAATTG 270316 Query 164030 CTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTC 164089 || | || ||| ||| || |||| || || ||||||||||| ||||||||||| || | Sbjct 270317 CTATTTT-GTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCAC 270375 Query 164090 CATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACT 164149 | || || ||||| || || ||||| || | ||| | ||||| |||||||| | Sbjct 270376 C-----CAGGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAATT 270430 Query 164150 GGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTAT 164209 ||| |||||||| || ||| ||| |||||||| || || |||| || |||||| Sbjct 270431 GGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGCTCTGCTAT 270490 Query 164210 CTGCTATTCACGG 164222 ||||||| || Sbjct 270491 GCACTATTCATGG 270503 >seq85 Length=1476802 Score = 102 bits (112), Expect = 9e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 162892 TTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTC 162951 |||||| || |||||||| || |||||||| || |||||||||||||| || ||||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 162952 TTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTAC 162995 ||||| || || || |||||||| ||||| ||||| ||||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 >seq291 Length=752601 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 164069 AATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTCTTAT 164128 |||| |||||||||| || || |||| || ||||| || || ||||| || | | Sbjct 473238 AATCTGGTTGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCT 473179 Query 164129 TCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTA 164188 || | ||||| |||||||| |||| |||||||| || |||||||||||| ||| ||| Sbjct 473178 TCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAG 473119 Query 164189 TACTAGGCGGAGCATTGCTATCTGCTATTCACGG 164222 || |||| | | |||||| |||||||| || Sbjct 473118 TATTAGGTGCTACTCTGCTATGCGCTATTCATGG 473085 >seq172 Length=1158115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 162867 TGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTT 162926 || ||| |||||||| || ||| ||||||||||| ||||||| || ||| ||| || Sbjct 764625 TGATACTTTCAACTAGAT---TGTATTCCAAGCAGAACACAACACCCTTATGAATCAATT 764569 Query 162927 CCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTC 162986 |||||||||| ||| | |||| |||| || || || || ||||| ||||| | ||| Sbjct 764568 TCACATGTTGGATGTAACTAGTGTTTTCGATGACTCGCTATTTAGTGCTATGCATGTTTC 764509 Query 162987 TT 162988 || Sbjct 764508 TT 764507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557397516031200