Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2728 214 2e-50 seq4860 98.7 1e-15 seq916 98.7 1e-15 seq85 93.3 5e-14 >seq2728 Length=129770 Score = 214 bits (236), Expect = 2e-50 Identities = 241/320 (75%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 169066 TGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAG 169125 |||| | || |||||||||| ||| ||||| |||||| | | |||||||||| | Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTG 96550 Query 169126 CAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTG 169185 ||||||| ||| || ||| || ||||| | || ||||| ||||||||||| |||| Sbjct 96551 CAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTG 96610 Query 169186 CAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATT 169245 | ||||| || ||||| || |||||||| |||| || ||||| | ||||| |||| Sbjct 96611 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 96670 Query 169246 TCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTC-CATCGGTATTATTGGT 169304 |||||||||| ||||| || || | | | | |||| ||| | | |||| | | || Sbjct 96671 TCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGG-GTAGTCGGC 96729 Query 169305 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGAT 169364 || ||||| ||||| |||||||||||||| ||||||||||| || | ||||| |||||| Sbjct 96730 CTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGAT 96789 Query 169365 CCAGAGTTTGAGACGTTCTA 169384 || || |||||||| ||||| Sbjct 96790 CCTGAATTTGAGACTTTCTA 96809 >seq4860 Length=43173 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 169301 TGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGA 169360 ||| || ||||| ||||| | |||||||||||| ||| |||||| ||| | ||||| | Sbjct 9556 TGGCCTGGCTCTGAACCTCCATGCTTATGACTTCATTTTCCAAGAAATCCGTGCAGCGAA 9497 Query 169361 AGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCT 169399 |||||| || |||||||| ||||||||||| || ||||| Sbjct 9496 AGATCCTGAATTTGAGACTTTCTACACCAAAAATATCCT 9458 >seq916 Length=298367 Score = 98.7 bits (108), Expect = 1e-15 Identities = 214/319 (67%), Gaps = 6/319 (2%) Strand=Plus/Plus Query 168771 TGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTT 168830 ||||||||||| || |||||||| | |||| |||| ||||| | | ||| | || Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 168831 GAACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATC 168890 |||| || | | | | | | || ||||| || || |||| || ||| || Sbjct 270256 GAACCTGCTTGATTTGTGCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAATT 270315 Query 168891 GCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCT 168950 ||| |||| ||| || || |||| || || ||||||||||| |||||||| || || Sbjct 270316 GCTATTTT-GTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGCA 270374 Query 168951 CCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAAC 169010 || || || |||| || || ||||| | |||||| | ||||| || ||||| Sbjct 270375 CC-----CAGGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAAT 270429 Query 169011 TGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTT 169070 |||| |||| ||||||||| ||| || || || || | || || || |||| Sbjct 270430 TGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGCTCTGCTA 270489 Query 169071 TCTGCCATTCATGGTGTTA 169089 | | |||||||||| || Sbjct 270490 TGCACTATTCATGGTGCTA 270508 >seq85 Length=1476802 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 167595 TTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGTA 167654 |||||| || ||||||||||| ||||| || || || ||| | || || ||||| ||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 167655 TTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCTCTT 167703 |||||||| || || |||||||| ||||| ||||| |||| |||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTATT 645653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560420504654400