Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2728 196 6e-45 seq518 141 1e-28 seq916 122 1e-22 seq85 111 2e-19 seq291 89.7 6e-13 seq2163 82.4 9e-11 >seq2728 Length=129770 Score = 196 bits (216), Expect = 6e-45 Identities = 248/341 (73%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 183749 TACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATG 183808 || |||| | || || || | ||||| ||||||| || ||||| ||||| || | | Sbjct 96476 TATTAGGCGCTGCTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCG 96535 Query 183809 AAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGT 183868 ||||||| || ||||| |||||| || ||| | | ||||||| |||||||| | Sbjct 96536 AAGATGGTGACGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTT 96595 Query 183869 ATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATA 183928 |||| ||||| || || || || || ||||| |||||||| |||||||| ||| ||||| Sbjct 96596 ATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 96655 Query 183929 AGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTA 183988 | ||||||| || ||||||||| | ||||| || || | | | | ||| | | || Sbjct 96656 AATGTTGGTTACATTTCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTC 96715 Query 183989 TTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCA 184048 || | | | || || ||||| || || ||||||||||| || || ||||| || Sbjct 96716 TTCGGGTAGTCGGCCTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTC 96775 Query 184049 GAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAG 184089 | ||||| |||||||| ||||||||||| ||||| ||||| Sbjct 96776 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTAATCAAAG 96816 >seq518 Length=568097 Score = 141 bits (156), Expect = 1e-28 Identities = 310/459 (68%), Gaps = 4/459 (1%) Strand=Plus/Minus Query 182314 ACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTAT-TCGGTGGTTCA 182372 ||||||| || ||||||| | ||||||||||||| ||| ||||||| | | ||| Sbjct 409624 ACAACATCCTCGTGCATCCATCTCACATGTTGGGTGGAGCCGGTGTATATAGCAACTTCT 409565 Query 182373 CTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAG 182432 | || ||||| || || ||||| |||| || | | | | || || || ||| | Sbjct 409564 -TATTCAGTGCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAA 409506 Query 182433 CAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTT 182492 | ||||| || | ||||| | ||| |||||| || || || |||| || || Sbjct 409505 AATGAGTCTACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTA 409446 Query 182493 GCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGT 182552 | |||||||| || || | |||| |||| ||||| || |||||||| || || Sbjct 409445 GGTGCCCATGGTTATTTGGCAGATTTG-TCTTACAATATGCTAGTTTCAACAATTCTTGT 409387 Query 182553 TCCTTG-CACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGG 182611 ||||| || || || | ||||| |||| || || || |||| ||| || || | | Sbjct 409386 TCCTTAACATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACG 409327 Query 182612 TGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 182671 | || || ||| | |||||||| || |||||||| | |||||| | | | || Sbjct 409326 TATCAGTACTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGACAA 409267 Query 182672 TCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGA 182731 ||||||| ||| ||| || | | | ||| | | || | || | ||| |||||| Sbjct 409266 TCAGGGTTATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGA 409207 Query 182732 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGA 182770 ||| ||| |||| |||| || ||||||||||| ||||| Sbjct 409206 AGTAATGTATGAATGTAATGCTCACAACTTCCCTCTAGA 409168 >seq916 Length=298367 Score = 122 bits (134), Expect = 1e-22 Identities = 164/227 (72%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 183558 TTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTA 183617 ||| ||||| || || |||| || ||| |||||| |||| || ||||||| | || || Sbjct 270285 TTATAATGCAATCGCATTCTTTGTTCCAATTGCTATTTT-GTTTCTGTATTCTTCATTTA 270343 Query 183618 TCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAG 183677 |||||||||||| ||| |||||||||||||| | || || ||||| || ||| | Sbjct 270344 TCCACTGGGTCAATCTAGTTGGTTCTTTGCACCCA-----GGTGTTGCAGCTATATTTTG 270398 Query 183678 ATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGG 183737 |||| | | ||| | || || || || || |||| ||| ||||| || ||| ||| || Sbjct 270399 ATTCATCCTCTTCTTCCAAGGGTTTCATAATTGGATGTTGAACCCATTTCATTTGACTGG 270458 Query 183738 AGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTG 183784 |||||| || || |||| || || || | |||| ||||||| Sbjct 270459 AGTTGCCGGAGTATTAGGTACTGCTCTGCTATGCACTATTCATGGTG 270505 >seq85 Length=1476802 Score = 111 bits (122), Expect = 2e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 182301 TTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTA 182360 |||||| || |||||||| ||||||||||| || ||||||||||||||||| |||||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 182361 TTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTAC 182404 ||||| || || || || ||||| ||||| ||||| ||||| || Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 645648 >seq291 Length=752601 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/166 (72%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 183637 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAG 183696 ||||||||||| || | ||| |||||||| || ||| ||||| | | ||| | || Sbjct 473230 TGGTTCTTTGCGCCCAATTTTAACGTAGCAGCTATATTTCGATTCATCCTCTTCTTCCAA 473171 Query 183697 GGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGA 183756 || || || || |||| ||| ||||| || |||||||||||| ||| ||| || |||| Sbjct 473170 GGGTTTCATAATTGGATGTTGAACCCATTTCATATGATGGGAATTGTTGGAGTATTAGGT 473111 Query 183757 GGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACAT 183802 | | || || | ||||| ||||||| || |||| ||| ||| Sbjct 473110 GCTACTCTGCTATGCGCTATTCATGGTGCTACCATAGA-AATCCAT 473066 >seq2163 Length=162151 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/162 (72%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 183223 TTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGG 183282 ||||| ||||||||||| || |||| |||| ||||||| | || | || |||||| Sbjct 135405 TTTGTAGGCTGGTCTGGCCTATTACTCTTTCCTTATGCTTATTTCGCTTTAGGAGGTTGG 135346 Query 183283 CTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTT 183342 ||| || | | ||||||| || ||||||||||||||| | || ||||||| | Sbjct 135345 TTTATAGGTATAACTTTTGTAACTTCATGGTATACCCATGGATTGGCCAGTTCCTATTTG 135286 Query 183343 GAAGGTGCTAACTTTCTT-ACGGCAGCTGTCTCGACGCCTGC 183383 |||||| || |||||| || || | || || || ||||| Sbjct 135285 GAAGGTTGCAA-TTTCTTGACCGCTGTAGTTTCCACTCCTGC 135245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611491418272800