Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq2728 205 1e-47 seq916 116 4e-21 seq85 86.0 7e-12 seq242 84.2 2e-11 >seq2728 Length=129770 Score = 205 bits (226), Expect = 1e-47 Identities = 239/320 (75%), Gaps = 2/320 (1%) Strand=Plus/Plus Query 166744 TGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGG 166803 |||| | || || ||||||| ||| ||||| || ||| | | |||||||||| | Sbjct 96491 TGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTCGAAGATGGTGACGGTG 96550 Query 166804 CAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAG 166863 ||||||| ||| || || || | ||||||| ||||| || ||||||||||| || | Sbjct 96551 CAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAGACTTATTCAATGGTCACTG 96610 Query 166864 CAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATT 166923 | ||||||| |||||| || ||||| || |||| ||| ||||| | ||||| |||| Sbjct 96611 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 96670 Query 166924 TCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTC-CATCGGTATTATTGGT 166982 |||||||||| ||||| || || | | | | |||| ||| | | |||| | | || Sbjct 96671 TCTTTATGCTATTTGTACCAGTAACCGATTTATGGATGAGTGCTCTTCGG-GTAGTCGGC 96729 Query 166983 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGAT 167042 || ||||| ||||| |||||||||||||| |||||||||||| | | ||||| || ||| Sbjct 96730 CTGGCTCTGAACCTCCGTGCTTATGACTTCGTTTCCCAAGAAATTCGTGCAGCGGAAGAT 96789 Query 167043 CCTGAGTTTGAAACCTTCTA 167062 ||||| ||||| || ||||| Sbjct 96790 CCTGAATTTGAGACTTTCTA 96809 >seq916 Length=298367 Score = 116 bits (128), Expect = 4e-21 Identities = 220/320 (69%), Gaps = 8/320 (3%) Strand=Plus/Plus Query 166449 TGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATGCTTCGGCAGTTT 166508 ||||| ||||||||||||||||||| ||| |||| ||||| | | || | || Sbjct 270196 TGGGCTTTTGTTGCTCTCCACGGTGTTTTCAGACTAACAGGTTTTACATTACGTTAATTC 270255 Query 166509 GAAATCGCTCGTCTAGTAGGTATTC-GTCCGTACAATGCAATCGCTTTTTCTGGTCCTAT 166567 ||| ||| | | || | ||| | | || ||||||||||| || | || ||| || Sbjct 270256 GAACCTGCTTGATTTGT-GCAATTGTGACTTTATAATGCAATCGCATTCTTTGTTCCAAT 270314 Query 166568 TGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGC 166627 |||| | || ||| ||| || |||| || || ||||||||||| |||||||| || || Sbjct 270315 TGCTATTTT-GTTTCTGTATTCTTCATTTATCCACTGGGTCAATCTAGTTGGTTCTTTGC 270373 Query 166628 TCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAA 166687 || || || |||| || || ||||| |||| ||| | ||||| || || || Sbjct 270374 ACCCA-----GGTGTTGCAGCTATATTTTGATTCATCCTCTTCTTCCAAGGGTTTCATAA 270428 Query 166688 CTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCT 166747 |||| |||||||||||||| ||| || || || || | | ||| ||| |||| Sbjct 270429 TTGGATGTTGAACCCATTTCATTTGACTGGAGTTGCCGGAGTATTAGGTACTGCTCTGCT 270488 Query 166748 TTCTGCCATCCATGGTGTTA 166767 | | || ||||||| || Sbjct 270489 ATGCACTATTCATGGTGCTA 270508 >seq85 Length=1476802 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 165271 TTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTA 165330 |||||| ||||| ||||| ||||||||||| || |||||| | || || ||||| ||| Sbjct 645545 TTCCAAATGGAACACAACATCCTTATGCATCCATTTCACATGTTGGGTGTAGCTGGTGTA 645604 Query 165331 TTCGGTGGATCTCTTTTCTCTGCTATGCATGG 165362 ||||| || || || ||| |||||||||||| Sbjct 645605 TTCGGCGGCTCCCTATTCAGTGCTATGCATGG 645636 >seq242 Length=908417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 165001 ATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTT 165060 || |||||||| | || ||||| ||||| ||||| || |||||| || | || Sbjct 334992 ATATGGGAAGCGTGATATATTGATGAGTGGTTATACAATGGCA-TCCTTATGAGCTAATT 334934 Query 165061 GTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTAC 165120 || | |||||| | | | | ||||||| ||||||||||||||||||||| | || Sbjct 334933 GTTCTACACTTCTTACTTGATCTAGCTTGGTACATGGGTCGTGAGTGGGAAGTTAGTTTT 334874 Query 165121 CGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCC 165180 |||| |||| ||| ||| ||| || |||||| || ||||| | ||| ||| Sbjct 334873 TGCCTATGTATATGTCTTTGAATTGTTGTTGCATATTCAGCTCCTGTTACCACTGTTGCT 334814 Query 165181 GCAGTTTTCCTGGTCTATCCT 165201 |||||| ||||||| ||| Sbjct 334813 ATTGTTTTCTTGGTCTACCCT 334793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563472283645440