Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq518 98.7 1e-15 >seq518 Length=568097 Score = 98.7 bits (108), Expect = 1e-15 Identities = 265/399 (66%), Gaps = 6/399 (2%) Strand=Plus/Minus Query 170278 GCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCA 170337 || || || ||||| | | ||| | | || | |||| || || || | || ||||| Sbjct 409556 GCTATCCATGGTTCCTTGGCAACCTATACTTTGATCAAGGAAACCACTAAAAATGAGTCT 409497 Query 170338 CAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACAT 170397 || | || || | |||| | |||| || ||||| | || ||||| | || ||| Sbjct 409496 ACTAATGAAGGTTATAGATTCAGTCAAGTGGACGAAACTCATAATATTGTAGGTGCCCAT 409437 Query 170398 GGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTT--C 170455 || || ||||| ||| || |||| ||||||||||| || |||||| | || ||| | Sbjct 409436 GGTTA-TTTGGCAGATTTGTCTTACAATATGCTAGTTTCAACAATTCTTGT-TCCTTAAC 409379 Query 170456 ACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCA 170515 | || || | ||| | | | || |||| | |||| ||||||| | | |||| | | Sbjct 409378 ATTTATTTTTGGCTGCTTGGCTTGCAGTAGGTATCTAGTTAACTGCTTTACGTATCAGTA 409319 Query 170516 CAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATC-TGGT 170574 | ||| | || ||||| ||||| || || | |||||| | | ||||| ||| ||| Sbjct 409318 CTATGACTTTCAACCTAAATGGTTTCAATTCCAACCAAACTAATGTAGA-CAATCAGGGT 409260 Query 170575 AAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATG 170634 | || || | | | | | || | | || | || | | ||||||||||||| Sbjct 409259 TATGTTATTACCATCTAGACTGATATCATCAATCATGGTAAGTTTGATATGGAAGTAATG 409200 Query 170635 CATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCa 170673 |||| ||||||| ||||||||||| || ||| | ||| Sbjct 409199 TATGAATGTAATGCTCACAACTTCCCTCTAGACATAGCA 409161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582653066486400