Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq518 136 5e-27 seq85 109 6e-19 >seq518 Length=568097 Score = 136 bits (150), Expect = 5e-27 Identities = 306/452 (68%), Gaps = 6/452 (1%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||| ||| | ||| ||||||||| ||| | || |||| | Sbjct 409174 GGGAAGTTGTGAGCATTACATTCATACATTACTTCCATATCAAACTTACCATGATTGATG 409233 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| | | || | | | |||| || | || ||| | | || ||| | || Sbjct 409234 ATATCAGTCTAGATGGTAATAACATAACCCTGATTGTCTACATTAGTTTGGTTGGAATTG 409293 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || | ||| || || | || | ||||| ||| | || || || Sbjct 409294 AAACCATTTAGGTTGAAAGTCATAGTACTGATACGTAAAGCAGTTAACTAGATACCTACT 409353 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAG-AACGACTATTGTTGAAGGAAGCATACTG 84223 | ||||||||||||| || || || || ||| | ||||||||| |||||| || Sbjct 409354 GCAAGCCAAGCAGCCAAAAATAAATGTTAAGGAACAAGAATTGTTGAAACTAGCATATTG 409413 Query 84224 GAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTG 84283 |||| || | || || || || || ||| | |||||||||| |||||| || |||| Sbjct 409414 TAAGACAAATCTGCCAAA-TAACCATGGGCACCTACAATATTATGAGTTTCGTCCACTTG 409472 Query 84284 ACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGA 84343 || ||| | ||||| | || || |||||| || ||||| ||| | || | | Sbjct 409473 ACTGAATCTATAACCTTCATTAGTAGACTCATTTTTAGTGGTTTCCTTGATCAAAGTATA 409532 Query 84344 AGT-GACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGA-ATACACCAGCAACT 84401 || | |||| |||||||| || ||| ||||| || | | ||||||| || | Sbjct 409533 GGTTGCCAAG-GAACCATGGATAGCACTGAATA-AGAAGTTGCTATATACACCGGCTCCA 409590 Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTT 84433 |||||||||||| | ||||||| |||||||| Sbjct 409591 CCCAACATGTGAGATGGATGCACGAGGATGTT 409622 >seq85 Length=1476802 Score = 109 bits (120), Expect = 6e-19 Identities = 85/100 (85%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 84349 CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACA 84408 |||| ||||||||||| ||| |||||| | || |||||||||||||| || ||||||| Sbjct 645643 CAAG-GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCCAACA 645585 Query 84409 TGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAA 84448 ||||||| ||||||||||||||||| |||||| ||||| Sbjct 645584 TGTGAAATGGATGCATAAGGATGTTGTGTTCCATTTGGAA 645545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571082537544480