Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Elaeis_20oleifera_20[genbank_20GCA_5F000441515.1_202013-07-26] 26,756 sequences; 1,402,725,009 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq28 105 8e-18 seq94 98.7 1e-15 >seq28 Length=2151574 Score = 105 bits (116), Expect = 8e-18 Identities = 144/200 (72%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 48363 CCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTT 48422 |||||||| | ||| | ||||||| ||| | || | | ||| || ||||| |||||| Sbjct 705650 CCTTGATCAACATAACGAGCAGTATCATTAAACAC-CGCAGCATCGGCACAATGCCATTT 705592 Query 48423 GATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATA 48482 || | ||||| || || ||||||||| || | |||| ||||||| || ||||| | Sbjct 705591 GAAGTTCCATTTGTCCCACGAATATAACTACCTGTGGCTCGTATATTATGAACTGAAACA 705532 Query 48483 CCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCT 48542 || || || ||||| || ||| | |||||| || || || ||||| ||||| Sbjct 705531 CCAATTCCTCCTGCAGACTTGCTTATGACAGCACATTCCTTCAGAGTGTCATAGATTCCC 705472 Query 48543 TCTATACTATCATCTATCAT 48562 || |||||||||||| |||| Sbjct 705471 TCAATACTATCATCTTTCAT 705452 >seq94 Length=1461416 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| |||| ||||||||||||||||| |||||| | ||||| | || | ||| | Sbjct 1163656 AGTGCCTGCGTTAAATAATGTTGGAGAAGCATGAGTGAACCAGCGTTGAGACATCAAATG 1163597 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGT--ATACCTATAGATACACGCATT 48716 ||||||| | ||||||||| ||||| ||| ||| || || | || || | ||| Sbjct 1163596 ATATGTTCTGAGAACAGAATCAATATC--ATTCTTGTGGATTCCAACAGCAACTCTCATC 1163539 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | ||| | ||| || ||||| || | ||| | | |||||| || || ||| | || Sbjct 1163538 AGCATGTGTTGTGGCCTTTCTACTACTTTTCCAGAAACTTTCAAGAGGTAAGATCTCTCA 1163479 Query 48777 AATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 | || ||||||||||| |||| || |||||| |||||| ||| || Sbjct 1163478 AGAGTCTTAAAACCAAAGTAGTCATAATCAAAGTCCCTATCATAAATTAT 1163429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||| | ||||||| ||| | || | | |||||| ||||| ||| Sbjct 1163986 CCCCCTTGATCAACATAACGAGCAGTATCATTAAACACCCGCAGCATTGGAACAATGCCA 1163927 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| || || ||||||||| || | || | ||||||| || |||| Sbjct 1163926 TTAGAAGTTCCATTTGTCCCACGAATATAACTGCCTGTGGCACGTATATTATGAACTGAA 1163867 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || || ||| | |||||| || | || ||||| ||| Sbjct 1163866 ACACCAATTCCTCCAGCAGACTTGCTTATGACAGCACATTCCTTCAAAGTGTCATATATT 1163807 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 1163806 CCCTCAATACTATCATCTTTCAT 1163784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561920802711840